Detailed information NTG0895598

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AAHT64_RS18910
• Genome accession: NZ_CP155054
• Coordinates: 3675593..3676714 (-)
• Length: 373 a.a.
• NCBI ID: WP_003246478.1
• Uniprot ID: O34327
• Organism: Bacillus subtilis subsp. subtilis strain R38
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3670593..3681714

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHT64_RS18890 (AAHT64_18890)	znuC	3671102..3671797 (-)	696	WP_003234730.1	zinc ABC transporter ATP-binding protein ZnuC	-
AAHT64_RS18895 (AAHT64_18895)	znuA	3671853..3672812 (-)	960	WP_003234733.1	metal ABC transporter substrate-binding protein	-
AAHT64_RS18900 (AAHT64_18900)	ycdG	3673000..3674685 (-)	1686	WP_003234736.1	alpha-glucosidase	-
AAHT64_RS18905 (AAHT64_18905)	ycdF	3674710..3675486 (-)	777	WP_019712418.1	SDR family oxidoreductase	-
AAHT64_RS18910 (AAHT64_18910)	rapF	3675593..3676714 (-)	1122	WP_003246478.1	response regulator aspartate phosphatase RapJ	Regulator
AAHT64_RS18915 (AAHT64_18915)	cwlK	3676837..3677340 (+)	504	WP_009966473.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
AAHT64_RS18920 (AAHT64_18920)	ycdC	3677348..3678709 (-)	1362	WP_010886397.1	YcdB/YcdC domain-containing protein	-
AAHT64_RS18925 (AAHT64_18925)	ycdB	3678896..3680317 (-)	1422	WP_003234747.1	YcdB/YcdC domain-containing protein	-
AAHT64_RS18930 (AAHT64_18930)	-	3680491..3680622 (+)	132	WP_003246334.1	hypothetical protein	-
AAHT64_RS18935 (AAHT64_18935)	ycdA	3680645..3681709 (+)	1065	WP_003234750.1	DUF4352 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44414.31 Da
• Isoelectric Point: 4.8371

>NTDB_id=895598 AAHT64_RS18910 WP_003246478.1 3675593..3676714(-) (rapF) [Bacillus subtilis subsp. subtilis strain R38]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALEHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=895598 AAHT64_RS18910 WP_003246478.1 3675593..3676714(-) (rapF) [Bacillus subtilis subsp. subtilis strain R38]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATATGATTTAGAAGATATGGAAGAGAATCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTACTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGAACATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCTGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCTTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCTGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGTT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (196-252)

3D structure

• PDB: 4GYO

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405