Detailed information NTG0895485

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: R4699_RS05940
• Genome accession: NZ_CP137105
• Coordinates: 1176097..1176687 (-)
• Length: 196 a.a.
• NCBI ID: WP_000613477.1
• Uniprot ID: A0A064BX72
• Organism: Streptococcus pneumoniae strain 16H2092
• Function: degradation of ComX; degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 1171097..1181687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4699_RS05915	-	1171648..1172412 (-)	765	WP_001186003.1	ABC transporter ATP-binding protein	-
R4699_RS05920	-	1172412..1173368 (-)	957	WP_000662293.1	branched-chain amino acid ABC transporter permease	-
R4699_RS05925	-	1173372..1174241 (-)	870	WP_000941421.1	branched-chain amino acid ABC transporter permease	-
R4699_RS05930	-	1174509..1175669 (-)	1161	WP_000726146.1	ABC transporter substrate-binding protein	-
R4699_RS05935	-	1175770..1176018 (-)	249	WP_000462126.1	YlbG family protein	-
R4699_RS05940	clpP	1176097..1176687 (-)	591	WP_000613477.1	ATP-dependent Clp protease proteolytic subunit ClpP	Regulator
R4699_RS05945	upp	1176861..1177490 (-)	630	WP_000515974.1	uracil phosphoribosyltransferase	-
R4699_RS05950	-	1177579..1178046 (-)	468	WP_000136976.1	cytidine/deoxycytidylate deaminase family protein	-
R4699_RS05955	-	1178071..1178622 (-)	552	WP_050104866.1	TetR/AcrR family transcriptional regulator	-
R4699_RS05960	-	1178747..1179592 (+)	846	WP_000219939.1	DegV family protein	-
R4699_RS05965	-	1179651..1180826 (+)	1176	WP_000680053.1	NAD(P)/FAD-dependent oxidoreductase	-
R4699_RS05970	-	1180846..1181301 (+)	456	WP_001823744.1	8-oxo-dGTP diphosphatase	-

Sequence

Protein

• Length: 196 a.a.
• Molecular weight: 21358.36 Da
• Isoelectric Point: 4.4910

>NTDB_id=895485 R4699_RS05940 WP_000613477.1 1176097..1176687(-) (clpP) [Streptococcus pneumoniae strain 16H2092]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQ
SMEKVHADAERDNWMSAQETLEYGFIDEIMANNSLN

Nucleotide

• Length: 591 bp

>NTDB_id=895485 R4699_RS05940 WP_000613477.1 1176097..1176687(-) (clpP) [Streptococcus pneumoniae strain 16H2092]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCTTACGATATTTACTCACGTCTTCTCAAAGACCGCAT
CATTATGCTGACAGGTCCGGTTGAAGACAATATGGCTAACTCTGTTATTGCCCAATTGCTTTTCTTGGATGCCCAAGATA
GTACGAAAGATATTTACCTTTATGTCAATACACCAGGTGGTTCTGTTTCAGCTGGTTTGGCAATCGTAGATACCATGAAC
TTTATCAAGGCAGATGTCCAAACCATTGTTATGGGAATGGCTGCATCTATGGGGACTGTCATCGCATCAAGTGGGGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATACATGATTCACCAACCAATGGGCGGTACAGGTGGTGGTACCCAACAAA
CTGATATGGCTATCGCTGCAGAACACTTGCTCAAAACTCGTAATACCTTGGAAAAAATCTTGGCTGAAAATTCAGGTCAG
TCAATGGAAAAAGTCCATGCAGATGCAGAACGTGATAACTGGATGAGCGCCCAGGAAACACTTGAATATGGCTTTATTGA
TGAAATTATGGCCAACAATTCATTGAACTAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (11-192)

3D structure

• AlphaFold DB: A0A064BX72

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Streptococcus pneumoniae Rx1	100	100	1
clpP	Streptococcus pneumoniae D39	100	100	1
clpP	Streptococcus pneumoniae R6	100	100	1
clpP	Streptococcus pneumoniae TIGR4	100	100	1
clpP	Streptococcus thermophilus LMG 18311	92.821	99.49	0.923
clpP	Streptococcus thermophilus LMD-9	92.821	99.49	0.923
clpP	Streptococcus pyogenes JRS4	90.769	99.49	0.903
clpP	Streptococcus pyogenes MGAS315	90.769	99.49	0.903
clpP	Streptococcus mutans UA159	85.714	100	0.857
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	85.128	99.49	0.847
clpP	Lactococcus lactis subsp. cremoris KW2	84.615	99.49	0.842
clpP	Bacillus subtilis subsp. subtilis str. 168	58.854	97.959	0.577
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.031	98.469	0.571