Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   R4699_RS04615 Genome accession   NZ_CP137105
Coordinates   915055..916008 (-) Length   317 a.a.
NCBI ID   WP_000495898.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 910055..921008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4699_RS04590 - 910543..910638 (-) 96 Protein_892 IS630 family transposase -
  R4699_RS04595 - 911051..911392 (+) 342 Protein_893 transposase -
  R4699_RS04600 prsA 911511..912452 (-) 942 WP_000727935.1 peptidylprolyl isomerase PrsA -
  R4699_RS04605 - 912519..913232 (-) 714 WP_078134373.1 O-methyltransferase -
  R4699_RS04610 pepF 913234..915036 (-) 1803 WP_050104895.1 oligoendopeptidase F Regulator
  R4699_RS04615 coiA 915055..916008 (-) 954 WP_000495898.1 competence protein CoiA Machinery gene
  R4699_RS04620 tehB 916081..916941 (-) 861 WP_000413763.1 SAM-dependent methyltransferase TehB -
  R4699_RS04625 smpB 916957..917424 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  R4699_RS04630 rnr 917387..919741 (-) 2355 WP_050104896.1 ribonuclease R -
  R4699_RS04635 secG 919843..920076 (-) 234 WP_000282517.1 preprotein translocase subunit SecG -
  R4699_RS04640 rpmG 920116..920265 (-) 150 WP_001810029.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38233.91 Da        Isoelectric Point: 9.3239

>NTDB_id=895478 R4699_RS04615 WP_000495898.1 915055..916008(-) (coiA) [Streptococcus pneumoniae strain 16H2092]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQIHLRQGPSVRTHFAHKSLKDCDFFFENESPEHLANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLSRLQQGFLYFSQNMGF
YVWELDKKKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYRNFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=895478 R4699_RS04615 WP_000495898.1 915055..916008(-) (coiA) [Streptococcus pneumoniae strain 16H2092]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGATCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACCTGGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGCTATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGAGTCGTCTACAGCAAGGTTTTCTGTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGAAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATTCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCGGAACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

98.423

100

0.984
  coiA Streptococcus pneumoniae Rx1

98.107

100

0.981
  coiA Streptococcus pneumoniae D39

98.107

100

0.981
  coiA Streptococcus pneumoniae R6

98.107

100

0.981
  coiA Streptococcus mitis NCTC 12261

88.328

100

0.883
  coiA Lactococcus lactis subsp. cremoris KW2

42.284

100

0.432