Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilZ   Type   Machinery gene
Locus tag   M9Y83_RS11410 Genome accession   NZ_CP155048
Coordinates   2384896..2385252 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain CCBH26428     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2379896..2390252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9Y83_RS11385 (M9Y83_0011385) fabF 2380108..2381352 (+) 1245 WP_124211911.1 beta-ketoacyl-ACP synthase II -
  M9Y83_RS11390 (M9Y83_0011390) pabC 2381352..2382167 (+) 816 WP_003113994.1 aminodeoxychorismate lyase -
  M9Y83_RS11395 (M9Y83_0011395) mltG 2382173..2383222 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  M9Y83_RS11400 (M9Y83_0011400) tmk 2383251..2383883 (+) 633 WP_003091125.1 dTMP kinase -
  M9Y83_RS11405 (M9Y83_0011405) - 2383876..2384862 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  M9Y83_RS11410 (M9Y83_0011410) pilZ 2384896..2385252 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  M9Y83_RS11415 (M9Y83_0011415) - 2385267..2386043 (+) 777 WP_003091117.1 TatD family hydrolase -
  M9Y83_RS11420 (M9Y83_0011420) - 2386269..2387402 (-) 1134 WP_003122488.1 aminotransferase class V-fold PLP-dependent enzyme -
  M9Y83_RS11425 (M9Y83_0011425) - 2387488..2388126 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  M9Y83_RS11430 (M9Y83_0011430) - 2388293..2389189 (+) 897 WP_003091113.1 radical SAM protein -
  M9Y83_RS11435 (M9Y83_0011435) - 2389254..2389886 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence


Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=895386 M9Y83_RS11410 WP_003091119.1 2384896..2385252(+) (pilZ) [Pseudomonas aeruginosa strain CCBH26428]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=895386 M9Y83_RS11410 WP_003091119.1 2384896..2385252(+) (pilZ) [Pseudomonas aeruginosa strain CCBH26428]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains


Predicted by InterProScan.

(17-106)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449

  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449