Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   AAVB74_RS21820 Genome accession   NZ_CP154920
Coordinates   4107146..4107580 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain FUA2232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4102146..4112580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB74_RS21805 (AAVB74_21805) epsK 4102775..4103626 (-) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -
  AAVB74_RS21810 (AAVB74_21810) epsJ 4103607..4104695 (-) 1089 WP_345805631.1 lipoprotein YdaJ -
  AAVB74_RS21815 (AAVB74_21815) topB 4104898..4107081 (-) 2184 WP_029317313.1 DNA topoisomerase III -
  AAVB74_RS21820 (AAVB74_21820) lrpC 4107146..4107580 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  AAVB74_RS21825 (AAVB74_21825) ydzA 4107765..4108055 (+) 291 WP_224912742.1 DUF3817 domain-containing protein -
  AAVB74_RS21830 (AAVB74_21830) amj 4108100..4108909 (-) 810 WP_003234394.1 lipid II flippase Amj -
  AAVB74_RS21835 (AAVB74_21835) ydaG 4109415..4109837 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  AAVB74_RS21840 (AAVB74_21840) ydaF 4109915..4110466 (-) 552 WP_061891248.1 GNAT family protein -
  AAVB74_RS21845 (AAVB74_21845) lyxE 4110552..4111055 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  AAVB74_RS21850 (AAVB74_21850) ydaD 4111071..4111931 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=895186 AAVB74_RS21820 WP_003246585.1 4107146..4107580(-) (lrpC) [Bacillus subtilis strain FUA2232]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=895186 AAVB74_RS21820 WP_003246585.1 4107146..4107580(-) (lrpC) [Bacillus subtilis strain FUA2232]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
GAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1