Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   R4710_RS04570 Genome accession   NZ_CP137101
Coordinates   851692..852096 (-) Length   134 a.a.
NCBI ID   WP_000588020.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P2012-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 846692..857096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4710_RS04530 rnpA 847106..847477 (-) 372 WP_000739246.1 ribonuclease P protein component -
  R4710_RS04535 - 847494..847625 (-) 132 WP_000768904.1 hypothetical protein -
  R4710_RS04540 - 847626..848816 (-) 1191 WP_000167766.1 acetate kinase -
  R4710_RS04545 comYH 848867..849820 (-) 954 WP_000345130.1 class I SAM-dependent methyltransferase Machinery gene
  R4710_RS04550 - 849881..850475 (-) 595 Protein_869 class I SAM-dependent methyltransferase -
  R4710_RS04555 comGG/cglG 850612..851025 (-) 414 WP_000265631.1 competence type IV pilus minor pilin ComGG Machinery gene
  R4710_RS04560 comGF/cglF 851003..851464 (-) 462 WP_000250531.1 competence type IV pilus minor pilin ComGF Machinery gene
  R4710_RS04565 comGE/cglE 851427..851729 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R4710_RS04570 comGD/cglD 851692..852096 (-) 405 WP_000588020.1 competence type IV pilus minor pilin ComGD Machinery gene
  R4710_RS04575 comGC/cglC 852089..852415 (-) 327 WP_000738632.1 comG operon protein ComGC Machinery gene
  R4710_RS04580 comGB/cglB 852417..853433 (-) 1017 WP_075218762.1 competence type IV pilus assembly protein ComGB Machinery gene
  R4710_RS04585 comGA/cglA/cilD 853381..854322 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  R4710_RS04590 - 854398..854763 (-) 366 WP_000286415.1 DUF1033 family protein -
  R4710_RS04595 - 854914..855972 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14662.89 Da        Isoelectric Point: 10.2164

>NTDB_id=895178 R4710_RS04570 WP_000588020.1 851692..852096(-) (comGD/cglD) [Streptococcus pneumoniae strain 16P2012-2]
MIKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTISNGSQKLPV
PKGIQVPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide


Download         Length: 405 bp        

>NTDB_id=895178 R4710_RS04570 WP_000588020.1 851692..852096(-) (comGD/cglD) [Streptococcus pneumoniae strain 16P2012-2]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCAGTAGAGGAACAGATTTTCTTTATGGAATTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTGAACTTAGATGGGCAGACGATTAGCAATGGCAGTCAAAAGTTGCCAGTC
CCTAAAGGAATTCAGGTCCCATCAGGCCAAAGTATTACATTTGACCGTGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae TIGR4

97.761

100

0.978
  comGD/cglD Streptococcus pneumoniae Rx1

97.015

100

0.97
  comGD/cglD Streptococcus pneumoniae D39

97.015

100

0.97
  comGD/cglD Streptococcus pneumoniae R6

97.015

100

0.97
  comGD/cglD Streptococcus mitis SK321

96.269

100

0.963
  comGD/cglD Streptococcus mitis NCTC 12261

96.992

99.254

0.963
  comYD Streptococcus gordonii str. Challis substr. CH1

59.055

94.776

0.56
  comYD Streptococcus mutans UA140

50

95.522

0.478
  comYD Streptococcus mutans UA159

50

95.522

0.478