Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R4714_RS05785 Genome accession   NZ_CP137099
Coordinates   1061715..1062473 (+) Length   252 a.a.
NCBI ID   WP_000410378.1    Uniprot ID   A0A064C0A8
Organism   Streptococcus pneumoniae strain 20824-4     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1056715..1067473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4714_RS05755 comE 1057312..1058064 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  R4714_RS05760 comD/comD1 1058061..1059386 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  R4714_RS05765 comC/comC1 1059407..1059532 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  R4714_RS05775 rlmH 1059814..1060293 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R4714_RS05780 htrA 1060476..1061657 (+) 1182 WP_000681601.1 S1C family serine protease Regulator
  R4714_RS05785 spo0J 1061715..1062473 (+) 759 WP_000410378.1 ParB/RepB/Spo0J family partition protein Regulator
  R4714_RS05790 dnaA 1062686..1064047 (+) 1362 WP_000660618.1 chromosomal replication initiator protein DnaA -
  R4714_RS05795 dnaN 1064206..1065342 (+) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  R4714_RS05800 - 1065407..1065601 (+) 195 WP_000285194.1 DUF951 domain-containing protein -
  R4714_RS05805 ychF 1065685..1066800 (+) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  R4714_RS05810 pth 1066871..1067440 (+) 570 WP_000163932.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29153.50 Da        Isoelectric Point: 9.0667

>NTDB_id=895039 R4714_RS05785 WP_000410378.1 1061715..1062473(+) (spo0J) [Streptococcus pneumoniae strain 20824-4]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=895039 R4714_RS05785 WP_000410378.1 1061715..1062473(+) (spo0J) [Streptococcus pneumoniae strain 20824-4]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTTTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
ATTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C0A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.593

100

0.508