Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R4535_RS12825 Genome accession   NZ_CP137091
Coordinates   2831617..2832732 (-) Length   371 a.a.
NCBI ID   WP_000654776.1    Uniprot ID   A0A2K2UIV5
Organism   Vibrio cholerae strain DL4211     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2826617..2837732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4535_RS12795 (R4535_12770) hemF 2827203..2828120 (-) 918 WP_000443983.1 oxygen-dependent coproporphyrinogen oxidase -
  R4535_RS12800 (R4535_12775) - 2828139..2828696 (-) 558 WP_001911770.1 L-threonylcarbamoyladenylate synthase -
  R4535_RS12805 (R4535_12780) purE 2828863..2829348 (+) 486 WP_000215774.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  R4535_RS12810 (R4535_12785) - 2829352..2830485 (+) 1134 WP_076025409.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  R4535_RS12815 (R4535_12790) - 2830558..2831124 (-) 567 WP_000087519.1 type I DNA topoisomerase -
  R4535_RS12820 (R4535_12795) - 2831138..2831614 (-) 477 WP_000979769.1 DUF494 family protein -
  R4535_RS12825 (R4535_12800) dprA 2831617..2832732 (-) 1116 WP_000654776.1 DNA-processing protein DprA Machinery gene
  R4535_RS12830 (R4535_12805) - 2832732..2833859 (-) 1128 WP_033928983.1 LysM peptidoglycan-binding domain-containing protein -
  R4535_RS12835 (R4535_12810) def 2833999..2834508 (+) 510 WP_000115010.1 peptide deformylase -
  R4535_RS12840 (R4535_12815) fmt 2834526..2835473 (+) 948 WP_076025407.1 methionyl-tRNA formyltransferase -
  R4535_RS12845 (R4535_12820) rsmB 2835529..2836809 (+) 1281 WP_069647580.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39960.95 Da        Isoelectric Point: 7.1952

>NTDB_id=894977 R4535_RS12825 WP_000654776.1 2831617..2832732(-) (dprA) [Vibrio cholerae strain DL4211]
MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLASGLKPEQLVFLTTQAAKQAELCLQWRSAANNRYIV
TPHCPLYPRLLKEISSSPPILFIEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQVPYQATLFSAVQGDEELPFPEL
LANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=894977 R4535_RS12825 WP_000654776.1 2831617..2832732(-) (dprA) [Vibrio cholerae strain DL4211]
ATGAAAGATCAGGATTTAGCGGCATGGTTGGCGCTCTGTTTTACTCCTAAACTCGGCAGCAAAACCATTTCTCACCTGCT
TGCGACCCGTTTGCCAGCCCAGTTGCAAAGTTTTACGCCTAAGCAATGGTTGGCCAGCGGGCTTAAGCCCGAACAACTGG
TATTTTTAACCACTCAAGCGGCTAAGCAAGCCGAGCTGTGTTTGCAATGGCGATCAGCAGCCAATAACCGCTATATCGTC
ACTCCTCATTGCCCGCTTTACCCTCGTTTATTGAAAGAGATTAGCTCATCGCCTCCCATCCTGTTTATCGAAGGAATATG
GGAAGCGGTGCATGACCCTGCGGTGGCTATCGTCGGTAGCCGTAATGCCAGTGTTGATGGGCGGCAGATCGCTCGCCAGT
TTGCCACTGAGCTCGCGCAGTCGGGTTTAGTGGTCACCAGTGGTTTAGCGCTTGGTATTGATGGCTATGCGCACGATGGC
GCTTTGCAAGCACAAGGGCAAACCGTGGCAGTATTAGGCTCAGGGCTGGCGCAGGTTTACCCCAAACAGCATCAAGGGTT
AGCGGAGCGAATCATCGCCCAAGGGGCCTTGGTTTCTGAGTTTGCCCCTCACACACCTCCTAAAGCCGATCACTTTCCGC
GCCGTAACCGAATTATCAGCGGCTTATCGCTGGGCGTTGTGGTGGTAGAAGCTGCGGAGAAAAGTGGCTCACTCATCACT
GCACGCTACGCCGCTGAGCAAGGGCGTGAGGTCTTTGTGGTTCCCGGCTCGATTTTTAATGCCGCCAGCCAAGGTAGCAA
TCAATTGATTCGTCAAGGCGCTTGTTTGGTGCAAAGTGTGCAACAAATTCATCAAGAGCTCAAAAATGCGCTGACTTGGT
CACTCTCTGAACAAGTTCCTTATCAAGCAACACTTTTTTCTGCTGTACAGGGCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAATAGAAGCTACACCTATTGATATTCTCGCAAGCCGGACCCAGATACCGGTGCAAGATATCATGAT
GCAGCTCTTGGAGCTTGAGCTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

98.652

100

0.987
  dprA Vibrio campbellii strain DS40M4

58.108

99.73

0.58
  dprA Legionella pneumophila strain ERS1305867

43.583

100

0.439
  dprA Glaesserella parasuis strain SC1401

43.351

100

0.439
  dprA Neisseria meningitidis strain C311

37.594

100

0.404
  dprA Neisseria meningitidis MC58

37.594

100

0.404
  dprA Neisseria gonorrhoeae strain FA1090

36.776

100

0.394
  dprA Acinetobacter baumannii D1279779

43.505

89.218

0.388
  dprA Acinetobacter baumannii strain A118

43.202

89.218

0.385
  dprA Neisseria gonorrhoeae MS11

35.949

100

0.383
  dprA Acinetobacter baylyi ADP1

42.042

89.757

0.377
  dprA Haemophilus influenzae Rd KW20

48.746

75.202

0.367