Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   AAVB98_RS03270 Genome accession   NZ_CP154895
Coordinates   614613..618005 (-) Length   1130 a.a.
NCBI ID   WP_013351763.1    Uniprot ID   A0A9P1NGY0
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 609613..623005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS03220 (AAVB98_03220) - 610327..610683 (-) 357 WP_013351772.1 YisL family protein -
  AAVB98_RS03225 (AAVB98_03225) - 610778..611683 (-) 906 WP_013351771.1 fumarylacetoacetate hydrolase family protein -
  AAVB98_RS03230 (AAVB98_03230) - 611900..612118 (+) 219 WP_013351770.1 aspartyl-phosphate phosphatase Spo0E family protein -
  AAVB98_RS03235 (AAVB98_03235) - 612310..612531 (+) 222 WP_003155135.1 spore germination protein -
  AAVB98_RS03240 (AAVB98_03240) - 612582..612776 (+) 195 WP_076984050.1 spore germination protein GerPB -
  AAVB98_RS03245 (AAVB98_03245) - 612811..613431 (+) 621 WP_061574030.1 spore germination protein GerPC -
  AAVB98_RS03250 (AAVB98_03250) - 613428..613604 (+) 177 WP_013351767.1 hypothetical protein -
  AAVB98_RS03255 (AAVB98_03255) - 613604..613999 (+) 396 WP_013351766.1 spore germination protein GerPE -
  AAVB98_RS03260 (AAVB98_03260) - 614039..614257 (+) 219 WP_013351765.1 spore germination protein -
  AAVB98_RS03265 (AAVB98_03265) - 614298..614597 (-) 300 WP_013351764.1 hypothetical protein -
  AAVB98_RS03270 (AAVB98_03270) sbcC 614613..618005 (-) 3393 WP_013351763.1 exonuclease subunit SbcC Machinery gene
  AAVB98_RS03275 (AAVB98_03275) sbcD 618002..619174 (-) 1173 WP_013351762.1 exonuclease subunit SbcD -
  AAVB98_RS03280 (AAVB98_03280) addA 619241..622945 (-) 3705 WP_041481719.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128292.40 Da        Isoelectric Point: 5.5159

>NTDB_id=894504 AAVB98_RS03270 WP_013351763.1 614613..618005(-) (sbcC) [Bacillus amyloliquefaciens strain Fad 77]
MKPILLTIKGLHSFREEQTIDFDGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKEEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKLAEQQFHEANERLEAAEKKRVQAK
ERFENHQEIWNLQTERNEYEVRQEKLEEKRPYITDLTDRLKEAETALALEPYADRYTEAVRRKERAEKEHELAKRKLEAE
TASFTRQNEAYEAWRIHKAEQEPKLVKEEELYQRLSAIEQKLLEAKKEAEKTKAEHGKKEEEYEAASKQLTAVKDRLTRG
QNRQNELKEELKAVQVTADERKKCQTAAQLAAGFQQTQEQIKKERVNLTAQLKNMEKLNGESEALSAKAKSEEEDITRAY
QTLQTVYHMVCETERSLKAAAERADKTQTDLRRRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRSRSAHETYSPDTA
VQERLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQNARVPELEAASSISGRPLDEAFSAVRLEWKQMKQDM
LSVKEKVTRLISTYQKTVKQAEQLGERIRYEEKEAERLKHSLEELESLSESRLNQYNEACGDIPLNRIDAWQASIDEKDR
QAEEFEKRIETSIAFLKEHEDEKERLQEKKHQLERERLELHYASERLQQVIDGYEQELGTAAEETSISAKLDAVRQELQL
LKSKEQSLFDALQQAQQSLNDAKGRESGSLMSLRDAESALEKAQNDWYGKSKDTGFAEPDQVKKSLLPKERAEEMKREID
EFLDSSKQLSANIRRVTDKLAGRRVTEEEWTASVSLLEQAEAESGAAKEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTMEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=894504 AAVB98_RS03270 WP_013351763.1 614613..618005(-) (sbcC) [Bacillus amyloliquefaciens strain Fad 77]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGCTTCAGAGAGGAACAGACCATTGACTTTGACGGACTGTCCGG
TGCCGGGGTGTTCGGAATTTTCGGCCCGACGGGAAGCGGAAAGTCGTCGATCCTTGATGCGATGACACTCGCTTTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACGCACGGCATTCTGAACCATGCCGAAGATCAGCTCGCCGTCTCTTTTACATTC
GCGCTTCAATCCGGCCACAGGGTGTCCTACAAAGTAGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTGAAAACCGC
CCTTTGCCGCTTGATTGAAATCAAAGAGGAACAAACCGTGCTTGCCGATAAAGCGAATGAAGTGAACAAAAAGGTGGAAG
AGCTTCTTGGTCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTCCCGCAAGGAAAGTTTGCCGAGTTTCTGTCACTG
AAAGGCGCGGAAAGAAGACATATGCTGCAGCGCCTTTTTAATCTGGAACAGTACGGTGACAGGCTTGTCAAAAAATTGCG
GCGGCGGGCGCAGGAAGCGGCCGCGAAAAAAAATGAGATGCTGGCAGAACAATCCGGCCTCGGAGACGCGGGGGAAGACG
CGCTGAAGCTGGCTGAACAGCAGTTTCATGAAGCGAATGAACGACTTGAAGCGGCTGAGAAGAAACGGGTCCAAGCAAAA
GAACGTTTTGAGAATCACCAGGAGATTTGGAACTTGCAGACAGAGAGAAACGAATACGAGGTGCGGCAGGAAAAGCTTGA
GGAAAAACGCCCGTATATCACGGATTTGACTGACCGTCTTAAAGAAGCGGAAACTGCTCTCGCTCTTGAACCGTATGCAG
ATCGCTACACGGAAGCCGTCCGCCGGAAGGAGCGCGCCGAGAAGGAGCACGAACTGGCCAAACGGAAATTAGAGGCGGAA
ACCGCTTCATTTACCCGGCAAAATGAAGCCTATGAAGCGTGGCGGATTCATAAGGCTGAACAAGAGCCGAAGCTTGTCAA
GGAAGAAGAGCTGTATCAAAGGCTGTCAGCCATTGAACAAAAGCTGCTTGAAGCAAAAAAAGAAGCGGAAAAAACAAAGG
CGGAGCACGGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAACAGCTGACCGCAGTGAAAGATCGCCTGACCCGCGGC
CAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGCAGTTCAAGTGACCGCTGATGAACGGAAAAAATGCCAGACCGC
CGCACAGCTGGCAGCCGGCTTTCAGCAGACACAGGAACAAATCAAGAAAGAACGGGTCAATCTGACAGCCCAGTTGAAAA
ACATGGAGAAGCTGAACGGAGAAAGCGAGGCGCTCAGCGCAAAGGCGAAATCGGAAGAAGAGGACATTACGCGCGCTTAT
CAAACACTTCAAACCGTTTACCATATGGTCTGTGAAACGGAACGTTCACTGAAAGCCGCAGCCGAACGGGCGGACAAAAC
GCAAACCGACCTGCGCAGGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTAATCGAAG
GAAAGCCTTGTCCTGTATGCGGCTCAACGCAGCATGACCGTTCGCGCTCCGCTCATGAAACATATTCGCCCGATACGGCT
GTACAGGAACGTTTGCAGCAGGTTGAAGCGCTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACGGCCAAGGT
TGCATTAGAAGAGCAGTCGGGGCGTTTTACCGAAGAATGTCCGTTTCTGCAAAACGCCCGGGTCCCGGAGCTGGAAGCCG
CTTCTTCTATCAGCGGCCGTCCGCTTGATGAAGCGTTCAGCGCCGTCCGCCTGGAGTGGAAACAAATGAAACAGGATATG
CTGTCGGTAAAAGAGAAGGTCACGAGACTGATCAGTACCTATCAAAAGACGGTGAAACAAGCTGAACAGCTGGGCGAACG
AATCCGCTATGAGGAAAAAGAAGCAGAGCGCCTCAAACATTCATTAGAAGAGCTCGAATCGCTGTCAGAAAGCCGCTTGA
ATCAGTACAATGAAGCCTGCGGGGATATTCCGTTAAACCGGATTGACGCCTGGCAGGCTTCGATAGACGAAAAGGACAGG
CAGGCAGAGGAATTCGAGAAGCGCATTGAAACAAGCATCGCCTTCCTAAAGGAACATGAAGATGAGAAAGAACGGCTGCA
GGAGAAGAAGCATCAGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCAGAGCGCCTGCAGCAGGTCATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCTGAAGAAACATCCATTTCTGCAAAGCTTGACGCAGTGCGGCAGGAATTACAGCTC
TTAAAATCGAAAGAACAGTCGTTATTCGATGCGCTGCAGCAGGCTCAGCAATCACTGAATGACGCAAAAGGCCGGGAATC
CGGGAGCCTCATGTCACTGCGGGACGCTGAGTCCGCCCTTGAGAAAGCGCAAAATGACTGGTACGGGAAATCAAAAGACA
CCGGGTTTGCCGAGCCGGATCAAGTCAAAAAAAGCCTGCTTCCGAAAGAGCGGGCCGAGGAAATGAAAAGAGAAATTGAT
GAATTTCTGGACAGCTCAAAGCAGCTTTCGGCAAATATCCGCCGTGTCACTGATAAATTAGCCGGCCGCCGGGTAACGGA
AGAAGAATGGACAGCATCGGTTTCTCTGCTGGAGCAGGCAGAGGCTGAGTCAGGCGCCGCCAAGGAGGAAAAAGGAGCTC
AGGCAAAAGCCTTTGCGGTGATGCAGAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAGGAACAGCTGGA
AAGCGTGGCCCGAGACGCCTCTGCACGGCTTGGAGCGCTGACAAGACAGCGGTATGCCATATTAGTCGATTCAGAAGGCG
GCTTCGTCATGCGCGATGACGCGAACGGCGGCGTCAAACGCCCCGTATCAAGCCTTTCCGGCGGTGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCCTTGTCTGCCCAGATTCAGCTGCGGGGGCAATATCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACGCTTGACCAAGGGCTTTTAGACACCGTTGTCACAGCGCTGGAAAAGCTGCAATCGGATAATTTGTCCG
TCGGGGTGATCAGCCATGTGCAGGAGCTCAGAGCGCGGCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGA
AAAGGCACCCGGGTCACAATGGAGATCATGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(6-264)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NGY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.67

100

0.65