Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   R0137_RS01515 Genome accession   NZ_CP136865
Coordinates   358792..359856 (-) Length   354 a.a.
NCBI ID   WP_405271211.1    Uniprot ID   -
Organism   Congregibacter brevis strain IMCC45268     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353792..364856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0137_RS01490 (R0137_01490) aroK 354288..354764 (-) 477 WP_407330048.1 shikimate kinase AroK -
  R0137_RS01495 (R0137_01495) pilQ 354869..357055 (-) 2187 WP_407328000.1 type IV pilus secretin PilQ -
  R0137_RS01500 (R0137_01500) - 357075..357605 (-) 531 WP_407328002.1 pilus assembly protein PilP -
  R0137_RS01505 (R0137_01505) pilO 357608..358222 (-) 615 WP_405271213.1 type 4a pilus biogenesis protein PilO -
  R0137_RS01510 (R0137_01510) - 358226..358792 (-) 567 WP_405271212.1 PilN domain-containing protein -
  R0137_RS01515 (R0137_01515) pilM 358792..359856 (-) 1065 WP_405271211.1 pilus assembly protein PilM Machinery gene
  R0137_RS01520 (R0137_01520) - 360073..362514 (+) 2442 WP_407328004.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38635.14 Da        Isoelectric Point: 4.2165

>NTDB_id=893170 R0137_RS01515 WP_405271211.1 358792..359856(-) (pilM) [Congregibacter brevis strain IMCC45268]
MLGLLGKRKQTPLLGIDISSTTVKLLELSRTGDKYRVESYAVCSLPQDAVVEKAINDVDGVANAVRSVVAQSRSKLKLVS
AAVAGSSVITKLIDMPVGLSDDEMETQLTLEADQYIPYPLEEVALDFEVQNPSAERENMVEVLLAACRRETIDLRVEAIE
SADLEAKVVDVEAYAMERSYSLIREHLELKEDSVVAIVDIGATMTTLSVLKNGNTIYTREQLFGGKQLTDEIMRRYGLPL
EEAGLAKKQGGLPDDYEPELLNPFRDAVVQQVTRSLQLFFSSSQYNDVDYIIMAGGVSFMDGLSELVQEQLGTPTVVANP
FAEMTISPRVNAVALGSDAPAMMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=893170 R0137_RS01515 WP_405271211.1 358792..359856(-) (pilM) [Congregibacter brevis strain IMCC45268]
TTGCTTGGGTTGCTAGGAAAACGTAAGCAGACGCCGCTGTTGGGGATCGATATTAGCTCCACAACGGTAAAGCTGTTGGA
GCTCAGTCGAACTGGGGACAAGTACCGCGTAGAGAGTTATGCGGTCTGTTCGCTTCCCCAGGATGCTGTAGTTGAGAAAG
CCATCAATGACGTGGATGGCGTGGCCAATGCTGTGCGTAGCGTTGTTGCGCAGTCGCGCTCGAAGCTAAAGCTGGTTTCG
GCCGCTGTCGCCGGTTCATCGGTGATTACTAAGCTCATTGATATGCCCGTGGGCCTCTCCGATGACGAGATGGAGACTCA
GCTCACCCTGGAAGCCGATCAATACATTCCCTACCCGCTTGAAGAGGTGGCGCTTGATTTTGAAGTGCAGAACCCCTCCG
CAGAGCGCGAGAATATGGTCGAGGTGCTTTTAGCGGCATGCCGTCGCGAGACCATTGACCTTCGAGTTGAAGCAATAGAG
TCGGCTGATTTGGAGGCGAAGGTCGTTGATGTTGAAGCCTACGCGATGGAGCGTTCTTACTCGCTCATCCGTGAGCATCT
GGAGCTTAAAGAAGACAGCGTAGTTGCTATCGTTGATATCGGCGCAACGATGACGACGCTCAGCGTTTTAAAGAACGGCA
ATACTATTTATACCCGAGAGCAATTGTTCGGCGGTAAGCAGCTCACGGATGAAATCATGCGTCGCTATGGACTTCCTCTC
GAGGAGGCCGGTCTTGCTAAAAAGCAGGGCGGTCTTCCCGATGACTACGAGCCAGAATTGCTGAATCCTTTCCGCGACGC
AGTGGTTCAGCAGGTTACTCGATCGCTGCAGCTTTTCTTTTCTTCGAGCCAGTACAACGACGTGGATTACATCATCATGG
CGGGCGGGGTGTCCTTTATGGACGGCCTGTCAGAGCTGGTTCAGGAGCAGCTGGGCACACCCACGGTAGTTGCCAATCCC
TTTGCCGAAATGACAATTTCTCCCCGGGTAAACGCGGTGGCTCTGGGTAGTGACGCACCCGCGATGATGATCGCCTGTGG
TCTGGCGCTGCGGAGCTTCGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(15-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.286

98.87

0.517
  comM Acinetobacter nosocomialis M2

52.286

98.87

0.517
  comM Acinetobacter baylyi ADP1

49.429

98.87

0.489
  pilM Legionella pneumophila strain ERS1305867

47.042

100

0.472