Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R0134_RS15435 Genome accession   NZ_CP136856
Coordinates   3477987..3479498 (+) Length   503 a.a.
NCBI ID   WP_319782828.1    Uniprot ID   -
Organism   Oceanisphaera sp. IT1-181     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3472987..3484498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0134_RS15420 ilvD 3473668..3475518 (-) 1851 WP_319782826.1 dihydroxy-acid dehydratase -
  R0134_RS15425 ilvM 3475685..3475945 (-) 261 WP_319782827.1 acetolactate synthase 2 small subunit -
  R0134_RS15430 ilvG 3475948..3477606 (-) 1659 WP_319784392.1 acetolactate synthase 2 catalytic subunit -
  R0134_RS15435 comM 3477987..3479498 (+) 1512 WP_319782828.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R0134_RS15440 - 3479546..3479845 (+) 300 WP_319782829.1 hypothetical protein -
  R0134_RS15445 - 3479913..3480515 (-) 603 WP_319782830.1 thiol:disulfide interchange protein DsbA/DsbL -
  R0134_RS15450 - 3480556..3481524 (-) 969 WP_319782831.1 serine/threonine protein kinase -
  R0134_RS15455 ccoG 3481586..3483007 (-) 1422 WP_319782832.1 cytochrome c oxidase accessory protein CcoG -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54834.39 Da        Isoelectric Point: 8.1124

>NTDB_id=893134 R0134_RS15435 WP_319782828.1 3477987..3479498(+) (comM) [Oceanisphaera sp. IT1-181]
MSLAVVFARASLGVAAPLVTVEAHLANGLPAFNIVGLPETTVKEARDRVRSALLNSGFEFPARRITVNLAPADLPKEGGR
FDLPIAMAILAASGQIPIANLDKLEFLGELALTGALRPIKGALPAVLAARDSQRFIILPVDNGAEAGMIQPSPARLASHL
LTITAWLRQEAELITPSAIVEQEPEHISDLCDVIGQEGGKRALEIAAAGQHNLLLLGPPGTGKSMLASRLPGLLPAMNEE
EALEIAAIRSICGENLKPHTWRLRAFRQPHHSSSAVALVGGGSFPRPGEISLAHNGVLFLDELTEFERRVLDALREPLET
HVISIARAARSVTFPACFQLIAAMNPSPCGHYQDGYSRSSPEQILRYLNKISGPFLDRFDLSVEVSLLPPGELSRPRAKA
ESSAEIRKRVLAARERQLLRAGKTNARLSAAELERYCPLNQADAEFLEQALHRMKLSIRAWHKLIRVARTIADLEHKTDI
SRQHLIEALGYRAMDRLIQQLQF

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=893134 R0134_RS15435 WP_319782828.1 3477987..3479498(+) (comM) [Oceanisphaera sp. IT1-181]
ATGTCACTCGCCGTAGTTTTTGCTCGCGCCAGTTTAGGTGTGGCCGCGCCCTTAGTTACCGTGGAAGCTCACCTTGCTAA
TGGCTTACCCGCCTTTAATATCGTGGGTTTACCTGAAACTACGGTCAAAGAGGCCAGAGACAGAGTACGCAGTGCGCTAT
TAAATTCTGGCTTTGAGTTCCCAGCTAGGCGCATTACCGTCAATCTGGCACCGGCAGATTTACCCAAAGAAGGCGGCCGC
TTCGACTTACCTATCGCCATGGCAATTTTAGCCGCCTCAGGGCAAATTCCCATCGCCAATCTAGATAAGCTGGAGTTCTT
AGGCGAGCTTGCCCTCACCGGTGCTTTAAGGCCGATAAAAGGCGCCTTACCGGCCGTATTGGCGGCGCGCGATAGCCAAC
GCTTTATCATATTGCCCGTCGATAACGGCGCTGAAGCAGGCATGATACAACCGAGCCCTGCAAGGCTGGCCAGCCATCTG
TTAACGATTACCGCTTGGTTACGCCAAGAAGCTGAGCTAATCACTCCCAGCGCCATCGTGGAGCAAGAACCAGAGCACAT
TAGCGACTTGTGTGACGTGATCGGCCAAGAAGGCGGTAAACGCGCCCTAGAAATAGCCGCCGCCGGTCAACACAACCTGT
TGCTCTTGGGCCCGCCCGGCACCGGAAAAAGCATGCTGGCTAGCCGTTTGCCCGGTTTATTACCCGCCATGAATGAAGAG
GAAGCCTTAGAAATCGCCGCCATTCGCTCTATTTGTGGCGAAAACCTGAAACCACACACTTGGCGGTTACGCGCCTTTCG
CCAACCTCATCATTCTTCCTCTGCGGTAGCCTTAGTCGGTGGTGGCAGCTTTCCTCGGCCCGGAGAAATTTCACTGGCTC
ATAATGGGGTATTATTTTTAGATGAACTCACCGAATTTGAACGCCGCGTGTTGGATGCTTTGCGCGAGCCCCTCGAAACT
CATGTCATCTCGATTGCGCGCGCCGCCCGCAGTGTGACTTTTCCTGCCTGCTTTCAATTAATCGCCGCCATGAACCCCAG
CCCCTGTGGCCATTATCAAGACGGCTACAGCCGCAGCTCGCCGGAGCAAATTCTGCGTTACCTCAATAAAATATCCGGGC
CCTTCTTAGACCGCTTTGATTTATCGGTAGAGGTGTCTTTACTGCCACCCGGCGAACTGAGCAGGCCCAGAGCCAAAGCT
GAGTCGTCTGCCGAGATTCGTAAACGGGTACTGGCCGCCCGTGAACGACAACTGCTTCGCGCCGGCAAAACCAACGCCCG
CTTGAGTGCCGCAGAATTAGAGCGCTATTGCCCACTAAACCAAGCGGATGCAGAATTTCTAGAACAGGCGCTGCATCGTA
TGAAACTCTCTATCCGCGCTTGGCATAAATTAATCCGCGTGGCGCGTACCATAGCTGACTTAGAACATAAAACAGACATT
AGCCGTCAACACTTAATTGAAGCGCTAGGGTATCGAGCCATGGACAGACTCATACAGCAGCTACAGTTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.437

100

0.604
  comM Glaesserella parasuis strain SC1401

59.136

100

0.598
  comM Haemophilus influenzae Rd KW20

58.696

100

0.59
  comM Vibrio campbellii strain DS40M4

58.566

99.801

0.584
  comM Legionella pneumophila str. Paris

48.096

99.205

0.477
  comM Legionella pneumophila strain ERS1305867

48.096

99.205

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.445