Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | RYQ61_RS03370 | Genome accession | NZ_CP136799 |
| Coordinates | 644616..645761 (-) | Length | 381 a.a. |
| NCBI ID | WP_003077215.1 | Uniprot ID | A0A1L7MXQ4 |
| Organism | Streptococcus intermedius strain XH2169 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 641531..664363 | 644616..645761 | within | 0 |
Gene organization within MGE regions
Location: 641531..664363
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RYQ61_RS03340 (RYQ61_03340) | - | 641531..641836 (-) | 306 | WP_003075274.1 | DUF1292 domain-containing protein | - |
| RYQ61_RS03345 (RYQ61_03345) | ruvX | 641854..642273 (-) | 420 | WP_021003313.1 | Holliday junction resolvase RuvX | - |
| RYQ61_RS03350 (RYQ61_03350) | - | 642273..642539 (-) | 267 | WP_009569646.1 | IreB family regulatory phosphoprotein | - |
| RYQ61_RS03355 (RYQ61_03355) | - | 642845..643402 (-) | 558 | WP_003077293.1 | SP0191 family lipoprotein | - |
| RYQ61_RS03360 (RYQ61_03360) | - | 643916..644050 (-) | 135 | WP_257995703.1 | hypothetical protein | - |
| RYQ61_RS03365 (RYQ61_03365) | spx | 644132..644530 (-) | 399 | WP_003026638.1 | transcriptional regulator Spx | - |
| RYQ61_RS03370 (RYQ61_03370) | recA | 644616..645761 (-) | 1146 | WP_003077215.1 | recombinase RecA | Machinery gene |
| RYQ61_RS03375 (RYQ61_03375) | cinA | 645810..647078 (-) | 1269 | WP_048785785.1 | competence/damage-inducible protein A | Machinery gene |
| RYQ61_RS03380 (RYQ61_03380) | - | 647214..647387 (-) | 174 | Protein_646 | CPBP family intramembrane glutamate endopeptidase | - |
| RYQ61_RS03385 (RYQ61_03385) | - | 647392..647946 (-) | 555 | WP_048785788.1 | DNA-3-methyladenine glycosylase I | - |
| RYQ61_RS03390 (RYQ61_03390) | ruvA | 647956..648546 (-) | 591 | WP_048785790.1 | Holliday junction branch migration protein RuvA | - |
| RYQ61_RS03395 (RYQ61_03395) | - | 648716..649219 (+) | 504 | WP_048785914.1 | helix-turn-helix domain-containing protein | - |
| RYQ61_RS03400 (RYQ61_03400) | - | 649203..649712 (+) | 510 | Protein_650 | RDD family protein | - |
| RYQ61_RS03405 (RYQ61_03405) | mutL | 649761..651707 (-) | 1947 | WP_102568435.1 | DNA mismatch repair endonuclease MutL | - |
| RYQ61_RS03410 (RYQ61_03410) | - | 651826..652974 (-) | 1149 | WP_070484744.1 | site-specific integrase | - |
| RYQ61_RS03415 (RYQ61_03415) | - | 653131..654135 (-) | 1005 | WP_070484742.1 | virulence RhuM family protein | - |
| RYQ61_RS03420 (RYQ61_03420) | - | 654331..655095 (+) | 765 | WP_001033569.1 | hypothetical protein | - |
| RYQ61_RS03425 (RYQ61_03425) | - | 655090..655785 (-) | 696 | WP_070484740.1 | hypothetical protein | - |
| RYQ61_RS03430 (RYQ61_03430) | - | 655884..656228 (-) | 345 | WP_142375095.1 | hypothetical protein | - |
| RYQ61_RS09865 | - | 656244..656336 (-) | 93 | Protein_657 | helix-turn-helix domain-containing protein | - |
| RYQ61_RS03440 (RYQ61_03440) | - | 656589..657248 (-) | 660 | WP_070484737.1 | helix-turn-helix transcriptional regulator | - |
| RYQ61_RS03445 (RYQ61_03445) | - | 657409..657612 (+) | 204 | WP_070484735.1 | helix-turn-helix transcriptional regulator | - |
| RYQ61_RS03450 (RYQ61_03450) | - | 657626..658243 (+) | 618 | WP_070484733.1 | Rha family transcriptional regulator | - |
| RYQ61_RS03455 (RYQ61_03455) | - | 658248..658415 (+) | 168 | WP_162885573.1 | hypothetical protein | - |
| RYQ61_RS03460 (RYQ61_03460) | - | 658758..659036 (+) | 279 | WP_070484731.1 | hypothetical protein | - |
| RYQ61_RS03465 (RYQ61_03465) | - | 659033..659209 (+) | 177 | WP_003027795.1 | hypothetical protein | - |
| RYQ61_RS03470 (RYQ61_03470) | - | 659199..659435 (+) | 237 | WP_070484729.1 | hypothetical protein | - |
| RYQ61_RS03475 (RYQ61_03475) | - | 659432..659782 (+) | 351 | WP_070484727.1 | hypothetical protein | - |
| RYQ61_RS03480 (RYQ61_03480) | - | 659763..660044 (+) | 282 | WP_016670425.1 | hypothetical protein | - |
| RYQ61_RS03485 (RYQ61_03485) | - | 660047..660400 (+) | 354 | WP_102568419.1 | head-tail adaptor protein | - |
| RYQ61_RS03490 (RYQ61_03490) | - | 660432..661238 (+) | 807 | WP_070484723.1 | DnaD domain protein | - |
| RYQ61_RS03495 (RYQ61_03495) | - | 661254..662081 (+) | 828 | WP_102568418.1 | ATP-binding protein | - |
| RYQ61_RS03500 (RYQ61_03500) | - | 662812..663252 (+) | 441 | WP_102568417.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| RYQ61_RS03505 (RYQ61_03505) | - | 663507..663620 (+) | 114 | Protein_671 | phage terminase small subunit P27 family | - |
| RYQ61_RS03510 (RYQ61_03510) | - | 663756..663947 (+) | 192 | WP_049508834.1 | type II toxin-antitoxin system HicA family toxin | - |
| RYQ61_RS03515 (RYQ61_03515) | - | 663983..664363 (+) | 381 | WP_102568416.1 | type II toxin-antitoxin system HicB family antitoxin | - |
Sequence
Protein
Download Length: 381 a.a. Molecular weight: 41243.89 Da Isoelectric Point: 4.9888
>NTDB_id=892713 RYQ61_RS03370 WP_003077215.1 644616..645761(-) (recA) [Streptococcus intermedius strain XH2169]
MAKKQKKIDEISKKFGEERQKALDNALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKIGQGSE
NAKKYLADHPEIFDEIDRKVRIHYGLIEDDAEDEKKVETSNSANKAEEVTLDLDGAIEIEE
MAKKQKKIDEISKKFGEERQKALDNALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKIGQGSE
NAKKYLADHPEIFDEIDRKVRIHYGLIEDDAEDEKKVETSNSANKAEEVTLDLDGAIEIEE
Nucleotide
Download Length: 1146 bp
>NTDB_id=892713 RYQ61_RS03370 WP_003077215.1 644616..645761(-) (recA) [Streptococcus intermedius strain XH2169]
ATGGCGAAAAAACAAAAAAAAATAGATGAAATTTCAAAGAAATTTGGTGAGGAACGCCAAAAAGCATTAGATAATGCACT
TAAAAATATTGAAAAGGATTTTGGTAAGGGAGCAATTATGCGCCTGGGGGAACGAGCTGAACAAAAAGTTCAAGTCATGA
GTTCAGGTAGCTTGGCATTAGATATTGCACTTGGTGCAGGAGGGTATCCAAAGGGACGGATTATTGAAATTTATGGTCCA
GAGTCTTCTGGTAAGACAACGGTGGCTCTTCATGCGGTAGCGCAGGCCCAAAAAGAGGGAGGGATTGCAGCTTTTATTGA
CGCCGAACATGCTCTTGATCCAGCCTATGCGCAGGCACTTGGGGTTAATATTGATGAATTATTACTTTCTCAACCGGATT
CAGGTGAACAGGGACTTGAAATTGCTGGAAAATTGATTGATTCGGGGGCCGTAGATTTGGTGGTTATCGACTCAGTTGCA
GCTCTTGTACCGCGTGCTGAAATTGATGGAGATATAGGAGATAGTCATGTTGGTTTACAAGCACGGATGATGAGCCAAGC
GATGCGGAAGTTATCTGCATCTATCAATAAAACGAAGACGATTGCAATTTTTATTAATCAATTACGAGAAAAAGTTGGTA
TCATGTTTGGAAATCCAGAAACAACGCCGGGAGGTCGTGCCCTTAAGTTTTATGCTTCAGTTCGCTTGGATGTCCGCGGA
AACACTCAAATCAAAGGTACAGGTGATGAAAAAGACACCAATGTGGGGAAAGAAACGAAGATCAAGGTCGTGAAGAATAA
AGTTGCTCCGCCGTTTAAGGAAGCCTTCGTAGAAATCATGTATGGTGAGGGCATTTCTAAAACAGGCGAGCTCATCAAGA
TTGCTACGGATCTAGACATTATTAAAAAAGCAGGTGCGTGGTATTCTTACAATGATGAAAAGATTGGACAAGGGTCTGAA
AATGCTAAGAAATACTTGGCAGATCATCCAGAAATTTTTGATGAAATTGATCGCAAGGTTAGAATTCATTATGGTTTGAT
TGAGGATGATGCTGAAGATGAGAAAAAGGTGGAAACAAGCAACTCAGCAAACAAAGCAGAGGAAGTCACATTAGATTTAG
ATGGTGCGATTGAAATCGAGGAATAA
ATGGCGAAAAAACAAAAAAAAATAGATGAAATTTCAAAGAAATTTGGTGAGGAACGCCAAAAAGCATTAGATAATGCACT
TAAAAATATTGAAAAGGATTTTGGTAAGGGAGCAATTATGCGCCTGGGGGAACGAGCTGAACAAAAAGTTCAAGTCATGA
GTTCAGGTAGCTTGGCATTAGATATTGCACTTGGTGCAGGAGGGTATCCAAAGGGACGGATTATTGAAATTTATGGTCCA
GAGTCTTCTGGTAAGACAACGGTGGCTCTTCATGCGGTAGCGCAGGCCCAAAAAGAGGGAGGGATTGCAGCTTTTATTGA
CGCCGAACATGCTCTTGATCCAGCCTATGCGCAGGCACTTGGGGTTAATATTGATGAATTATTACTTTCTCAACCGGATT
CAGGTGAACAGGGACTTGAAATTGCTGGAAAATTGATTGATTCGGGGGCCGTAGATTTGGTGGTTATCGACTCAGTTGCA
GCTCTTGTACCGCGTGCTGAAATTGATGGAGATATAGGAGATAGTCATGTTGGTTTACAAGCACGGATGATGAGCCAAGC
GATGCGGAAGTTATCTGCATCTATCAATAAAACGAAGACGATTGCAATTTTTATTAATCAATTACGAGAAAAAGTTGGTA
TCATGTTTGGAAATCCAGAAACAACGCCGGGAGGTCGTGCCCTTAAGTTTTATGCTTCAGTTCGCTTGGATGTCCGCGGA
AACACTCAAATCAAAGGTACAGGTGATGAAAAAGACACCAATGTGGGGAAAGAAACGAAGATCAAGGTCGTGAAGAATAA
AGTTGCTCCGCCGTTTAAGGAAGCCTTCGTAGAAATCATGTATGGTGAGGGCATTTCTAAAACAGGCGAGCTCATCAAGA
TTGCTACGGATCTAGACATTATTAAAAAAGCAGGTGCGTGGTATTCTTACAATGATGAAAAGATTGGACAAGGGTCTGAA
AATGCTAAGAAATACTTGGCAGATCATCCAGAAATTTTTGATGAAATTGATCGCAAGGTTAGAATTCATTATGGTTTGAT
TGAGGATGATGCTGAAGATGAGAAAAAGGTGGAAACAAGCAACTCAGCAAACAAAGCAGAGGAAGTCACATTAGATTTAG
ATGGTGCGATTGAAATCGAGGAATAA
Similar proteins
Only experimentally validated proteins are listed.