Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R0513_RS03145 Genome accession   NZ_CP136638
Coordinates   602223..602996 (+) Length   257 a.a.
NCBI ID   WP_002873646.1    Uniprot ID   -
Organism   Campylobacter jejuni strain S2-20     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 597223..607996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0513_RS03130 (R0513_03130) - 598072..600006 (-) 1935 WP_002918407.1 RNB domain-containing ribonuclease -
  R0513_RS03135 (R0513_03135) ilvC 600125..601147 (+) 1023 WP_002873648.1 ketol-acid reductoisomerase -
  R0513_RS03140 (R0513_03140) - 601151..602233 (+) 1083 WP_002873647.1 divergent polysaccharide deacetylase family protein -
  R0513_RS03145 (R0513_03145) dprA 602223..602996 (+) 774 WP_002873646.1 DNA-processing protein DprA Machinery gene
  R0513_RS03150 (R0513_03150) ruvX 602993..603376 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R0513_RS03155 (R0513_03155) - 603405..604244 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R0513_RS03160 (R0513_03160) msrA 604420..604917 (-) 498 WP_002874288.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R0513_RS03165 (R0513_03165) ppa 604958..605476 (-) 519 WP_002852138.1 inorganic diphosphatase -
  R0513_RS03170 (R0513_03170) adk 605486..606064 (-) 579 WP_002868428.1 adenylate kinase -
  R0513_RS03175 (R0513_03175) aspS 606061..607812 (-) 1752 WP_041160066.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28846.70 Da        Isoelectric Point: 7.0853

>NTDB_id=892078 R0513_RS03145 WP_002873646.1 602223..602996(+) (dprA) [Campylobacter jejuni strain S2-20]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTATNLLLKENKAKLICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=892078 R0513_RS03145 WP_002873646.1 602223..602996(+) (dprA) [Campylobacter jejuni strain S2-20]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTGCACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGCATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAGCAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTGC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGAAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAGATATGAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.611

100

0.996
  dprA Helicobacter pylori 26695

48.75

93.385

0.455