Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   AAC934_RS02465 Genome accession   NZ_CP152362
Coordinates   475865..476299 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain LP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470865..481299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS02435 (AAC934_02435) ydaD 471514..472374 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  AAC934_RS02440 (AAC934_02440) lyxE 472390..472893 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  AAC934_RS02445 (AAC934_02445) ydaF 472979..473530 (+) 552 WP_342624521.1 GNAT family protein -
  AAC934_RS02450 (AAC934_02450) ydaG 473608..474030 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  AAC934_RS02455 (AAC934_02455) amj 474536..475345 (+) 810 WP_003234394.1 lipid II flippase Amj -
  AAC934_RS02460 (AAC934_02460) ydzA 475390..475680 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  AAC934_RS02465 (AAC934_02465) lrpC 475865..476299 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  AAC934_RS02470 (AAC934_02470) topB 476364..478547 (+) 2184 WP_046160064.1 DNA topoisomerase III -
  AAC934_RS02475 (AAC934_02475) - 478750..479838 (+) 1089 WP_248719460.1 lipoprotein YdaJ -
  AAC934_RS02480 (AAC934_02480) epsK 479819..480670 (+) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=892066 AAC934_RS02465 WP_003246585.1 475865..476299(+) (lrpC) [Bacillus subtilis strain LP]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=892066 AAC934_RS02465 WP_003246585.1 475865..476299(+) (lrpC) [Bacillus subtilis strain LP]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1