Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RVY75_RS08050 Genome accession   NZ_CP136381
Coordinates   1563164..1563766 (-) Length   200 a.a.
NCBI ID   WP_002166063.1    Uniprot ID   J8I015
Organism   Bacillus mycoides strain PAMC 29501     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1558164..1568766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY75_RS08030 (RVY75_08030) dnaD 1558488..1559195 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  RVY75_RS08035 (RVY75_08035) nth 1559211..1559858 (+) 648 WP_000933020.1 endonuclease III -
  RVY75_RS08040 (RVY75_08040) - 1559862..1560380 (+) 519 WP_002086586.1 YpoC family protein -
  RVY75_RS08045 (RVY75_08045) - 1560407..1563097 (-) 2691 WP_316280786.1 PBP1A family penicillin-binding protein -
  RVY75_RS08050 (RVY75_08050) recU 1563164..1563766 (-) 603 WP_002166063.1 Holliday junction resolvase RecU Machinery gene
  RVY75_RS08055 (RVY75_08055) - 1563870..1564895 (+) 1026 WP_002166062.1 DUF2515 domain-containing protein -
  RVY75_RS08060 (RVY75_08060) - 1565239..1565385 (-) 147 WP_307838389.1 phage portal protein -
  RVY75_RS08065 (RVY75_08065) - 1565504..1565746 (+) 243 WP_002011865.1 hypothetical protein -
  RVY75_RS08070 (RVY75_08070) - 1565762..1566106 (+) 345 WP_002011864.1 YppE family protein -
  RVY75_RS08075 (RVY75_08075) - 1566285..1566476 (-) 192 WP_002030817.1 YppF family protein -
  RVY75_RS08080 (RVY75_08080) - 1566654..1567268 (+) 615 WP_316280787.1 YppG family protein -
  RVY75_RS08085 (RVY75_08085) - 1567425..1567850 (+) 426 WP_002166061.1 CotD family spore coat protein -
  RVY75_RS08090 (RVY75_08090) - 1567907..1568461 (+) 555 WP_002166060.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23324.55 Da        Isoelectric Point: 9.5600

>NTDB_id=890448 RVY75_RS08050 WP_002166063.1 1563164..1563766(-) (recU) [Bacillus mycoides strain PAMC 29501]
MTIRYPNGKRYDQASQPHKTPIKKNTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=890448 RVY75_RS08050 WP_002166063.1 1563164..1563766(-) (recU) [Bacillus mycoides strain PAMC 29501]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAAAATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACTAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8I015

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.745

100

0.64