Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   RWA07_RS17580 Genome accession   NZ_CP136183
Coordinates   3627918..3628658 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain ABO21-A001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3622918..3633658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWA07_RS17560 (RWA07_17560) aroB 3623460..3624542 (-) 1083 WP_002057695.1 3-dehydroquinate synthase -
  RWA07_RS17565 (RWA07_17565) aroK 3624571..3625140 (-) 570 WP_000643712.1 shikimate kinase AroK -
  RWA07_RS17570 (RWA07_17570) pilQ 3625152..3627317 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  RWA07_RS17575 (RWA07_17575) pilP 3627380..3627907 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  RWA07_RS17580 (RWA07_17580) pilO 3627918..3628658 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  RWA07_RS17585 (RWA07_17585) pilN 3628655..3629296 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  RWA07_RS17590 (RWA07_17590) pilM 3629296..3630354 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  RWA07_RS17595 (RWA07_17595) ponA 3630515..3633070 (+) 2556 WP_005137336.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=889678 RWA07_RS17580 WP_000076101.1 3627918..3628658(-) (pilO) [Acinetobacter baumannii strain ABO21-A001]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=889678 RWA07_RS17580 WP_000076101.1 3627918..3628658(-) (pilO) [Acinetobacter baumannii strain ABO21-A001]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683