Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F6I35_RS00915 Genome accession   NZ_CP136160
Coordinates   149933..150412 (+) Length   159 a.a.
NCBI ID   WP_101800546.1    Uniprot ID   -
Organism   Streptococcus anginosus strain UMB8616     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 144933..155412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I35_RS00870 (F6I35_0000870) - 145060..145524 (+) 465 WP_224783702.1 hypothetical protein -
  F6I35_RS00875 (F6I35_0000875) - 145803..145985 (+) 183 WP_083313018.1 hypothetical protein -
  F6I35_RS00880 (F6I35_0000880) - 146091..146348 (+) 258 WP_150867158.1 HTH domain-containing protein -
  F6I35_RS00885 (F6I35_0000885) - 146640..146975 (+) 336 WP_150867161.1 excisionase -
  F6I35_RS00890 (F6I35_0000890) - 146986..147438 (+) 453 WP_150867164.1 hypothetical protein -
  F6I35_RS00895 (F6I35_0000895) - 147443..148159 (+) 717 WP_101800548.1 ERF family protein -
  F6I35_RS00900 (F6I35_0000900) - 148169..148495 (+) 327 WP_070811673.1 hypothetical protein -
  F6I35_RS00905 (F6I35_0000905) - 148506..149549 (+) 1044 WP_070840893.1 DUF1351 domain-containing protein -
  F6I35_RS00910 (F6I35_0000910) - 149595..149846 (+) 252 WP_070840892.1 hypothetical protein -
  F6I35_RS00915 (F6I35_0000915) ssb 149933..150412 (+) 480 WP_101800546.1 single-stranded DNA-binding protein Machinery gene
  F6I35_RS00920 (F6I35_0000920) - 150425..150688 (+) 264 WP_101800545.1 hypothetical protein -
  F6I35_RS00925 (F6I35_0000925) - 150669..150947 (+) 279 WP_070811677.1 hypothetical protein -
  F6I35_RS00930 (F6I35_0000930) - 150961..151750 (+) 790 Protein_147 DNA methyltransferase -
  F6I35_RS00935 (F6I35_0000935) - 151737..151940 (+) 204 WP_070811678.1 hypothetical protein -
  F6I35_RS00940 (F6I35_0000940) - 151937..152362 (+) 426 WP_070811679.1 helix-turn-helix domain-containing protein -
  F6I35_RS00945 (F6I35_0000945) - 152371..153120 (+) 750 WP_070811680.1 DNA-methyltransferase -
  F6I35_RS00950 (F6I35_0000950) - 153174..153524 (+) 351 WP_224783703.1 hypothetical protein -
  F6I35_RS10785 - 153600..153798 (+) 199 Protein_152 hypothetical protein -
  F6I35_RS00965 (F6I35_0000965) - 153873..154274 (+) 402 WP_101800543.1 hypothetical protein -
  F6I35_RS00970 (F6I35_0000970) - 154275..154562 (+) 288 WP_070811683.1 hypothetical protein -
  F6I35_RS00975 (F6I35_0000975) - 154555..154935 (+) 381 WP_070811684.1 hypothetical protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17939.70 Da        Isoelectric Point: 5.1848

>NTDB_id=888928 F6I35_RS00915 WP_101800546.1 149933..150412(+) (ssb) [Streptococcus anginosus strain UMB8616]
MINNVVLVGRMTRDAELRYTQSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGALIGITGVIQTR
NYENQQGQRVYVTEVIANSFQLLESRNSQNQSGNFQTGNSSNYGNTNSMPNFSKEAEQTSFFRGNTTNPLDISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=888928 F6I35_RS00915 WP_101800546.1 149933..150412(+) (ssb) [Streptococcus anginosus strain UMB8616]
ATGATAAATAATGTTGTCTTAGTTGGTCGAATGACTAGAGATGCTGAATTACGATATACGCAAAGCAATCAAGCAGTCGC
AACTTTCACTCTTGCTGTCAATCGTAACTTTAAAAACCAAAATGGGGAACGTGAGGCAGACTTTATCAATTGTGTTATCT
GGCGTCAGCAAGCAGAAAATCTCGCAAATTGGGCTAAAAAAGGCGCTTTGATTGGTATTACTGGTGTTATTCAGACACGT
AACTACGAAAATCAGCAAGGTCAACGCGTCTATGTCACAGAAGTTATTGCTAATAGTTTTCAATTACTAGAGAGCAGAAA
CAGCCAAAACCAAAGTGGTAATTTCCAAACAGGAAACAGTTCAAATTATGGCAACACAAACTCGATGCCTAATTTTAGCA
AAGAAGCAGAGCAGACATCGTTTTTCCGAGGGAATACGACAAATCCTTTGGACATCTCAGATGATGATCTGCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.846

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.395

100

0.61
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

70.44

0.365
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.717

66.667

0.365