Detailed information NTG0885775

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: BIV16_RS08420
• Genome accession: NZ_CP135162
• Coordinates: 1829268..1830632 (-)
• Length: 454 a.a.
• NCBI ID: WP_075681869.1
• Uniprot ID: -
• Organism: Roseburia sp. 831b
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1824268..1835632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BIV16_RS08415 (BIV16_08450)	-	1827762..1829168 (+)	1407	WP_075681680.1	alanine/glycine:cation symporter family protein	-
BIV16_RS08420 (BIV16_08455)	radA	1829268..1830632 (-)	1365	WP_075681869.1	DNA repair protein RadA	Machinery gene
BIV16_RS08425 (BIV16_08460)	-	1830753..1831169 (-)	417	WP_075681682.1	endosialidase	-
BIV16_RS08430 (BIV16_08465)	-	1831276..1833732 (-)	2457	WP_075681684.1	ATP-dependent Clp protease ATP-binding subunit	-
BIV16_RS08435 (BIV16_08470)	-	1833765..1835597 (-)	1833	WP_075681686.1	cadherin-like beta sandwich domain-containing protein	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 49941.00 Da
• Isoelectric Point: 6.7278

>NTDB_id=885775 BIV16_RS08420 WP_075681869.1 1829268..1830632(-) (radA) [Roseburia sp. 831b]
MAKGKTTVFFCQSCGYESAKWMGQCPGCKEWNTFVEEMVEKKSAHKAGAVRKSDLQVLPLSKIEMTKEDRMSTQIKELDR
VLGGGIVPGSMVLVGGDPGIGKSTLLLQVCKHLSEQQIKVLYISGEESLQQIKIRAERIGTFRDSLSLLCETNLDLIEEV
IQREKPQVVVIDSIQTMYREAVSSSPGSVSQVRESTGTLMQIAKGMNISIFIVGHVTKEGVVAGPRVLEHMVDTVLYFEG
DRHAAYRILRGVKNRFGSTNEIGVFEMREDGLSEVENPSEFMLNGRPQGASGSVVACSMEGTRPILLEIQALVCRSNFGM
PRRTAAGTDYNRVNLLMAVLEKRLGIRMGECDAYINIAGGIKMNEPAIDLGIVLALISSYKEIPIDEHTICFGEVGLSGE
VRAVNMAEQRVLEARKLGFDTCILPQACMDTLKKIDGIRLVGVRNVKEAIDFIK

Nucleotide

• Length: 1365 bp

>NTDB_id=885775 BIV16_RS08420 WP_075681869.1 1829268..1830632(-) (radA) [Roseburia sp. 831b]
ATGGCAAAAGGGAAAACAACAGTATTTTTTTGTCAGTCATGTGGTTATGAATCTGCAAAATGGATGGGGCAGTGTCCGGG
CTGCAAGGAATGGAACACCTTTGTGGAGGAGATGGTTGAAAAAAAATCAGCTCACAAAGCAGGGGCGGTAAGAAAAAGTG
ATTTGCAGGTGCTGCCGCTTTCTAAGATTGAAATGACAAAAGAGGACAGAATGTCAACACAGATAAAGGAACTTGACCGT
GTCCTTGGCGGTGGAATTGTTCCGGGTTCCATGGTGTTAGTGGGCGGTGATCCTGGAATTGGAAAGTCAACCCTGCTCTT
GCAGGTGTGCAAGCATCTCTCAGAGCAACAGATAAAGGTTTTATATATTTCAGGGGAGGAATCTCTTCAGCAGATTAAAA
TCAGAGCAGAGCGAATTGGCACATTTCGGGATAGCCTGTCCTTGCTTTGCGAGACGAATTTAGACCTCATTGAGGAAGTG
ATTCAAAGAGAAAAACCACAGGTGGTAGTGATTGATTCGATTCAGACGATGTACCGGGAAGCGGTTTCTTCTTCTCCGGG
AAGCGTTTCACAGGTAAGAGAATCCACAGGAACGCTCATGCAGATTGCAAAGGGCATGAATATTTCGATTTTTATTGTTG
GACATGTAACAAAAGAAGGTGTTGTTGCGGGACCGAGAGTACTCGAACATATGGTCGACACAGTGCTTTATTTTGAAGGA
GACAGACACGCTGCCTACCGTATTTTGCGAGGGGTGAAAAATCGTTTTGGCTCCACCAATGAAATTGGTGTTTTTGAGAT
GCGGGAGGATGGCCTTAGTGAGGTCGAGAATCCGTCGGAGTTTATGCTAAACGGAAGACCGCAGGGAGCGTCCGGTTCTG
TGGTAGCCTGTTCGATGGAGGGAACGAGGCCGATTCTTTTGGAAATCCAGGCGCTGGTATGCCGCAGCAACTTTGGAATG
CCGCGAAGAACTGCAGCGGGAACCGATTATAACAGAGTGAATCTTTTGATGGCCGTTTTGGAAAAAAGACTCGGAATCAG
AATGGGAGAGTGTGACGCATACATTAACATTGCAGGCGGAATCAAGATGAATGAACCGGCGATTGATTTGGGAATTGTGC
TGGCGCTGATATCAAGCTATAAAGAGATTCCAATTGACGAACACACGATTTGCTTTGGAGAGGTTGGTTTAAGTGGCGAA
GTAAGAGCTGTAAACATGGCAGAACAAAGAGTGTTAGAAGCAAGAAAACTAGGATTTGATACCTGTATTTTGCCACAGGC
ATGTATGGACACATTAAAAAAGATAGATGGAATCCGTCTCGTCGGAGTAAGGAATGTAAAAGAGGCAATTGATTTTATCA
AATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (62-220)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

• Subunit ChlI of Mg-chelatase (ChlI) (344-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	58.94	99.78	0.588
radA	Streptococcus mitis NCTC 12261	52.444	99.119	0.52
radA	Streptococcus pneumoniae Rx1	52.444	99.119	0.52
radA	Streptococcus pneumoniae D39	52.444	99.119	0.52
radA	Streptococcus pneumoniae R6	52.444	99.119	0.52
radA	Streptococcus pneumoniae TIGR4	52.444	99.119	0.52
radA	Streptococcus mitis SK321	52.444	99.119	0.52