Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RNZ43_RS09235 Genome accession   NZ_CP135143
Coordinates   1853459..1853893 (+) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus velezensis strain L33a     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1848459..1858893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS09230 - 1851959..1853170 (-) 1212 WP_102422503.1 cytochrome P450 family protein -
  RNZ43_RS09235 nucA/comI 1853459..1853893 (+) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RNZ43_RS09240 - 1853954..1854709 (+) 756 WP_070081855.1 YoaK family protein -
  RNZ43_RS09245 - 1854743..1855105 (-) 363 WP_007410383.1 hypothetical protein -
  RNZ43_RS09250 - 1855298..1856626 (-) 1329 WP_416406338.1 S8 family peptidase -
  RNZ43_RS09255 - 1856805..1857038 (+) 234 WP_058906034.1 hypothetical protein -
  RNZ43_RS09260 - 1857294..1858001 (+) 708 WP_003154076.1 poly-gamma-glutamate hydrolase family protein -
  RNZ43_RS09265 - 1858061..1858513 (+) 453 WP_070081858.1 OsmC family protein -
  RNZ43_RS09270 - 1858527..1858880 (-) 354 WP_003154073.1 DMT family transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=885589 RNZ43_RS09235 WP_007611576.1 1853459..1853893(+) (nucA/comI) [Bacillus velezensis strain L33a]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=885589 RNZ43_RS09235 WP_007611576.1 1853459..1853893(+) (nucA/comI) [Bacillus velezensis strain L33a]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCAGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGCTATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486