Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AABK01_RS01905 Genome accession   NZ_AP027639
Coordinates   415288..415920 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain PSJ-29     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 410288..420920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK01_RS01880 (VEE36_03720) yhfG 410420..410587 (+) 168 WP_000736860.1 YhfG family protein -
  AABK01_RS01885 (VEE36_03730) fic 410577..411179 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  AABK01_RS01890 (VEE36_03740) pabA 411211..411774 (+) 564 WP_085452727.1 aminodeoxychorismate synthase component 2 -
  AABK01_RS01895 (VEE36_03750) argD 411860..413080 (+) 1221 WP_077492861.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AABK01_RS01900 (VEE36_03760) yhfK 413147..415237 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  AABK01_RS01905 (VEE36_03770) crp 415288..415920 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AABK01_RS01910 (VEE36_03780) yhfA 416222..416626 (+) 405 WP_001148910.1 OsmC family protein -
  AABK01_RS01915 (VEE36_03790) prkB 416681..417550 (-) 870 WP_001274680.1 phosphoribulokinase -
  AABK01_RS01920 (VEE36_03800) yheU 417604..417822 (-) 219 WP_000907085.1 YheU family protein -
  AABK01_RS01925 (VEE36_03810) yheT 417816..418838 (-) 1023 WP_001753125.1 hydrolase -
  AABK01_RS01930 (VEE36_03820) yheS 418838..420751 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=88447 AABK01_RS01905 WP_000242755.1 415288..415920(-) (crp) [Escherichia coli strain PSJ-29]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=88447 AABK01_RS01905 WP_000242755.1 415288..415920(-) (crp) [Escherichia coli strain PSJ-29]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment