Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   QDT75_RS03085 Genome accession   NZ_CP151078
Coordinates   632355..632870 (-) Length   171 a.a.
NCBI ID   WP_279722913.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PUMA0052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 627355..637870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDT75_RS03060 (QDT75_03060) - 627902..629545 (+) 1644 WP_279722915.1 nitrite/sulfite reductase -
  QDT75_RS03065 (QDT75_03065) - 629538..630023 (+) 486 WP_000935250.1 DUF934 domain-containing protein -
  QDT75_RS03070 (QDT75_03070) - 630105..630458 (+) 354 WP_000457783.1 SMR family transporter -
  QDT75_RS03075 (QDT75_03075) - 630501..630944 (-) 444 WP_001176580.1 VOC family protein -
  QDT75_RS03080 (QDT75_03080) - 631071..632246 (-) 1176 WP_279722914.1 thiolase family protein -
  QDT75_RS03085 (QDT75_03085) fimT 632355..632870 (-) 516 WP_279722913.1 GspH/FimT family pseudopilin Machinery gene
  QDT75_RS03090 (QDT75_03090) omp38 633252..634322 (+) 1071 WP_000777878.1 outer membrane protein Omp38 -
  QDT75_RS03095 (QDT75_03095) - 634447..634605 (-) 159 WP_000692859.1 hypothetical protein -
  QDT75_RS03100 (QDT75_03100) - 634609..635814 (-) 1206 WP_023896239.1 RtcB family protein -
  QDT75_RS03105 (QDT75_03105) - 636092..637552 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19504.81 Da        Isoelectric Point: 9.4471

>NTDB_id=883373 QDT75_RS03085 WP_279722913.1 632355..632870(-) (fimT) [Acinetobacter baumannii strain PUMA0052]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLVGLKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=883373 QDT75_RS03085 WP_279722913.1 632355..632870(-) (fimT) [Acinetobacter baumannii strain PUMA0052]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGTCATGTACGCTTAGTAGGGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.373

97.076

0.421