Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RL452_RS02660 Genome accession   NZ_CP134620
Coordinates   553000..553569 (+) Length   189 a.a.
NCBI ID   WP_000872871.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Sa9     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 548000..558569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL452_RS02635 (RL452_02635) cysE 549213..549860 (+) 648 WP_011382202.1 serine O-acetyltransferase -
  RL452_RS02640 (RL452_02640) cysS 549844..551244 (+) 1401 WP_000631985.1 cysteine--tRNA ligase -
  RL452_RS02645 (RL452_02645) - 551237..551641 (+) 405 WP_000370187.1 Mini-ribonuclease 3 -
  RL452_RS02650 (RL452_02650) rlmB 551649..552395 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RL452_RS02655 (RL452_02655) - 552395..552919 (+) 525 WP_000664738.1 NYN domain-containing protein -
  RL452_RS02660 (RL452_02660) sigH 553000..553569 (+) 570 WP_000872871.1 RNA polymerase sigma factor Regulator
  RL452_RS02665 (RL452_02665) rpmG 553684..553827 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  RL452_RS02670 (RL452_02670) secE 553883..554065 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RL452_RS02675 (RL452_02675) nusG 554078..554626 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RL452_RS02680 (RL452_02680) rplK 554807..555229 (+) 423 WP_001085789.1 50S ribosomal protein L11 -
  RL452_RS02685 (RL452_02685) rplA 555437..556129 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  RL452_RS02690 (RL452_02690) rplJ 556401..556901 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  RL452_RS02695 (RL452_02695) rplL 556944..557312 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RL452_RS02700 (RL452_02700) - 557487..558095 (+) 609 WP_000020294.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23048.88 Da        Isoelectric Point: 9.6253

>NTDB_id=882426 RL452_RS02660 WP_000872871.1 553000..553569(+) (sigH) [Staphylococcus aureus strain Sa9]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKNLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=882426 RL452_RS02660 WP_000872871.1 553000..553569(+) (sigH) [Staphylococcus aureus strain Sa9]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTGGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCAGTAAAGTATGATTATTTGAGAAAAAATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979