Detailed information NTG0880883

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: WMY90_RS06190
• Genome accession: NZ_CP150875
• Coordinates: 1217858..1220362 (+)
• Length: 834 a.a.
• NCBI ID: WP_022096700.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain TCI125
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1212858..1225362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WMY90_RS06170 (WMY90_06170)	-	1215094..1215636 (-)	543	WP_002947866.1	CvpA family protein	-
WMY90_RS06175 (WMY90_06175)	-	1215633..1215950 (-)	318	WP_002947863.1	hypothetical protein	-
WMY90_RS06180 (WMY90_06180)	rnhC	1216264..1217154 (+)	891	WP_022096699.1	ribonuclease HIII	-
WMY90_RS06185 (WMY90_06185)	lepB	1217173..1217796 (+)	624	WP_002947854.1	signal peptidase I	-
WMY90_RS06190 (WMY90_06190)	recD/recD2/recDB	1217858..1220362 (+)	2505	WP_022096700.1	ATP-dependent RecD-like DNA helicase	Machinery gene
WMY90_RS06195 (WMY90_06195)	-	1220418..1220744 (-)	327	WP_002944371.1	AzlD domain-containing protein	-
WMY90_RS06200 (WMY90_06200)	-	1220731..1221402 (-)	672	WP_180473202.1	AzlC family ABC transporter permease	-
WMY90_RS06205 (WMY90_06205)	tsaD	1221475..1222488 (-)	1014	WP_002951922.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
WMY90_RS06210 (WMY90_06210)	rimI	1222488..1222901 (-)	414	WP_014621963.1	ribosomal protein S18-alanine N-acetyltransferase	-
WMY90_RS06215 (WMY90_06215)	tsaB	1222903..1223589 (-)	687	WP_002947108.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
WMY90_RS06220 (WMY90_06220)	-	1223852..1224082 (+)	231	WP_002947111.1	DNA-dependent RNA polymerase subunit epsilon	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 94126.57 Da
• Isoelectric Point: 4.6079

>NTDB_id=880883 WMY90_RS06190 WP_022096700.1 1217858..1220362(+) (recD/recD2/recDB) [Streptococcus thermophilus strain TCI125]
MQEFYFSGTIERIIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGKQLQMTRYERS
KPSASGLIKYFSSDNFKGIGKKTAERIVDIYGEDPIDKILEDPSKLEQIPNLSKVNREAFLAKLKINYGTEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEKYPYLLVEEVQGIGFKMADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KSLLERTIILLESSRQIELDPALVAHQLTNLIQEDKVQNIETKIFDNTLYFAEQGIYTHLTRITKDQPDISAEDKIQASL
ERVEDELGITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSGLPIILAAPTGRAARRMNEL
TKLPSATIHRHLGLNGEDDFKTLDDYLDCDLIIIDEFSMVDTWLANQLFESISDTTQVIIVGDQDQLPSVGPGQVLADLL
QIDDLPKVCLTKIFRQSEDSTIVTLASQIRQGQLPTDFTEKKADRSYFEANANHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPKEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVHSEG
AKRNTYLIQRFEQTYTQAVDKSVEKNVKNEGTDAFNQTKTENNRPSETLENKDFSENINPSQTLINTYSHPVDKSVNKPV
QTEENYRLTEENWATIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=880883 WMY90_RS06190 WP_022096700.1 1217858..1220362(+) (recD/recD2/recDB) [Streptococcus thermophilus strain TCI125]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAGCGCATCATTTTTGAAAATGCCAGTAATTTTTTTCGTATCCTACTCTT
AGAAATTGATGAAACTGACAGTGATTTTGAAGACTATGAAATCATTGTTACTGGAACTATGGGGGATGTCATGGAGGGGG
AAGACTATACCTTCTGGGGTCAGCTAACCAATCACCCCAAATATGGCAAACAACTCCAAATGACTCGCTACGAGCGTTCA
AAACCCTCTGCCAGTGGCCTTATCAAATATTTCTCCAGTGATAATTTCAAAGGAATCGGTAAGAAAACGGCCGAGCGTAT
TGTCGATATTTATGGCGAAGACCCTATTGACAAGATTCTCGAAGACCCTAGTAAATTAGAACAGATTCCTAATCTGTCCA
AGGTAAACCGAGAAGCCTTCCTTGCAAAATTAAAAATCAACTATGGTACTGAACAAATCTTGTCCAAACTTTCCAGCTAT
GGACTCACACCAAAGGCTGCCTCACAAATTTTCAACCAATATAAGGAAGAATCACTTAACCTTATCGAAAAATATCCTTA
TCTCTTGGTAGAGGAAGTCCAGGGAATTGGATTTAAAATGGCCGATCAACTAGCCGAACGCCTAGGGATTGCTAGCGATG
CTCCTGAGCGTTTACGAGCCGCCCTAATTCACTGTCTGCTAGAAGCTAGTATGGAAGAAGGGGACACCTACATCGAAGCC
AAGTCCTTGCTTGAACGGACTATCATTCTTTTGGAAAGTTCTCGCCAGATTGAACTTGACCCTGCCTTGGTTGCTCACCA
ATTGACCAACCTCATCCAAGAGGATAAGGTGCAAAATATAGAGACTAAAATTTTTGATAATACCCTATATTTTGCAGAAC
AGGGCATCTATACCCACCTAACTCGTATCACGAAAGACCAGCCTGACATCAGTGCTGAGGACAAAATCCAAGCAAGTCTT
GAAAGGGTGGAAGATGAGCTTGGTATCACCTATGACAAGGTTCAAAAAGATGCCATTATTAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGTGGTCCCGGAACAGGGAAAACCACTGTTATTAACGGAATTATTAAAACCTATGCTGACCTTCATG
GTTTAGACCTCAAAAAGTCTGGTTTACCCATTATTTTAGCAGCGCCAACGGGACGGGCTGCTCGTCGGATGAACGAACTG
ACCAAGCTCCCTAGTGCCACTATCCATAGACATTTGGGGCTTAATGGCGAGGACGATTTCAAGACCTTAGATGACTATCT
CGATTGCGATTTGATTATCATCGATGAGTTCTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTCGAAAGCATTTCCG
ATACTACTCAAGTAATCATTGTAGGTGACCAAGATCAGCTACCTTCTGTGGGCCCTGGCCAAGTCTTAGCTGACCTTTTG
CAGATTGATGACTTGCCTAAGGTTTGCCTAACCAAAATTTTCAGACAATCTGAGGATTCCACTATTGTTACCTTAGCTAG
CCAGATACGCCAAGGCCAACTACCCACTGATTTCACAGAGAAAAAAGCTGACCGATCATACTTTGAGGCTAATGCTAACC
ATATTCCACAGATGGTCCCTAAAATTGTCTCTGCCGCTATTAAAAGTGGGATCGCTGCTCAGGATGTACAGATTCTGGCC
CCCATGTACCGGGGACAGGCTGGTATCAACAATCTCAATACCATTATGCAGGATCTACTTAATCCCAAAGAAAAAGCCAA
TCAATTTGCCTTTAATGATATTTTCTTCCGTAAGAATGACAAGATTCTCCACCTGGTCAACGATACAGAACTCAATGTCT
TCAATGGCGATATCGGAATCATTACTGATCTCATACCTGGTAAATATACTGAAAGTAAGCAAGACGAAATTTACATGTCC
TTCGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCTATACACAAATC
CCAAGGGAGTGAATTCCCAGTCGTTATCCTTCCCATCACACGCCAAAGTGGGCGTATGCTTCAACGTAACCTCATCTACA
CCGCTATCACACGCGCCAAGAGTAAACTGGTCATGTTGGGAGAAATCGCAGCCTTCGATTATGCCGTTCACAGCGAGGGG
GCCAAACGTAATACCTACCTCATCCAACGTTTTGAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAAAAGAATGT
TAAAAACGAGGGAACAGACGCCTTCAATCAAACAAAAACGGAAAACAATAGACCCTCAGAAACCCTTGAAAACAAAGACT
TCTCGGAAAATATCAATCCATCCCAAACTCTTATTAACACTTATTCACATCCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGAAAACTGGGCAACTATCGACCCAATGATAGGTCTCAGCGAAGACGATAT
TGCAGCCTTTTTTAACAACAACTAG

Domains

Predicted by InterProScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• AAA domain (AAA_30) (331-524)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	44.578	89.568	0.399