Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RI196_RS17375 Genome accession   NZ_CP134501
Coordinates   3605494..3605877 (-) Length   127 a.a.
NCBI ID   WP_311066645.1    Uniprot ID   -
Organism   Aeribacillus composti strain HB-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3601920..3614862 3605494..3605877 within 0


Gene organization within MGE regions


Location: 3601920..3614862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI196_RS17370 (RI196_17370) - 3601920..3604667 (+) 2748 WP_311066644.1 DEAD/DEAH box helicase -
  RI196_RS17375 (RI196_17375) ssbB 3605494..3605877 (-) 384 WP_311066645.1 single-stranded DNA-binding protein Machinery gene
  RI196_RS17380 (RI196_17380) - 3606025..3606420 (-) 396 WP_117017298.1 hypothetical protein -
  RI196_RS17385 (RI196_17385) - 3606681..3607082 (+) 402 WP_066248034.1 helix-turn-helix domain-containing protein -
  RI196_RS17390 (RI196_17390) - 3607156..3607614 (+) 459 WP_311066646.1 YwpF-like family protein -
  RI196_RS17395 (RI196_17395) - 3607801..3608061 (-) 261 WP_311066647.1 hypothetical protein -
  RI196_RS17400 (RI196_17400) fabZ 3608541..3608963 (-) 423 WP_094244697.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RI196_RS17405 (RI196_17405) - 3609162..3609428 (-) 267 WP_094244698.1 DNA-directed RNA polymerase subunit beta -
  RI196_RS17410 (RI196_17410) - 3609563..3610843 (-) 1281 WP_311066648.1 transposase -
  RI196_RS17415 (RI196_17415) tnpA 3610844..3611260 (-) 417 WP_094246129.1 IS200/IS605 family transposase -
  RI196_RS17420 (RI196_17420) - 3611486..3612316 (-) 831 WP_311066649.1 flagellar hook-basal body protein -
  RI196_RS17425 (RI196_17425) - 3612333..3613151 (-) 819 WP_063388997.1 flagellar hook-basal body protein -
  RI196_RS17430 (RI196_17430) - 3613441..3614442 (-) 1002 WP_063388998.1 rod shape-determining protein -
  RI196_RS17435 (RI196_17435) spoIIID 3614587..3614862 (-) 276 WP_063388999.1 sporulation transcriptional regulator SpoIIID -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14228.00 Da        Isoelectric Point: 7.8527

>NTDB_id=880638 RI196_RS17375 WP_311066645.1 3605494..3605877(-) (ssbB) [Aeribacillus composti strain HB-1]
MINHVTLVGRLTKDPEIRYTSEGAPVANITLAVSRNFRNAAGEIDTDFVHCTLWRRTAENTANYCRKGSIVGVIGRIQTR
NYENSEGKKVYVTEVVADSVRFMGTPPQRIRARELFDPESAPEQSEA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=880638 RI196_RS17375 WP_311066645.1 3605494..3605877(-) (ssbB) [Aeribacillus composti strain HB-1]
GTGATCAACCATGTGACGCTCGTCGGTCGATTAACGAAAGATCCTGAAATCCGCTATACAAGTGAAGGGGCTCCTGTTGC
CAATATTACGCTGGCTGTGAGCCGCAACTTTCGCAATGCGGCAGGGGAAATCGACACAGATTTTGTTCATTGTACACTTT
GGAGACGAACAGCTGAAAATACTGCAAATTACTGCCGGAAAGGATCGATCGTTGGCGTAATCGGAAGAATTCAAACGCGA
AACTATGAAAACAGCGAGGGCAAAAAAGTGTACGTAACAGAAGTTGTTGCGGATTCCGTTCGATTTATGGGCACTCCGCC
GCAAAGAATACGGGCAAGAGAGCTTTTCGATCCGGAATCCGCACCTGAACAGTCTGAGGCATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

70.37

85.039

0.598
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.136

81.102

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

57.282

81.102

0.465
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.119

85.827

0.37