Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   RJD38_RS14560 Genome accession   NZ_CP134271
Coordinates   3216575..3217999 (+) Length   474 a.a.
NCBI ID   WP_005597561.1    Uniprot ID   F9RRT6
Organism   Vibrio scophthalmi strain 20FBVib0200     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3211575..3222999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD38_RS14540 (RJD38_14535) - 3212523..3213134 (-) 612 WP_005597544.1 flavin reductase family protein -
  RJD38_RS14545 (RJD38_14540) - 3213838..3214518 (+) 681 WP_005597547.1 nucleoside-diphosphate sugar epimerase -
  RJD38_RS14550 (RJD38_14545) - 3214592..3215668 (-) 1077 WP_065430325.1 serine hydrolase domain-containing protein -
  RJD38_RS14555 (RJD38_14550) - 3215978..3216355 (+) 378 WP_005597559.1 RidA family protein -
  RJD38_RS14560 (RJD38_14555) sbcB 3216575..3217999 (+) 1425 WP_005597561.1 exodeoxyribonuclease I Machinery gene
  RJD38_RS14565 (RJD38_14560) - 3218043..3218408 (+) 366 WP_005597563.1 CidA/LrgA family protein -
  RJD38_RS14570 (RJD38_14565) - 3218408..3219085 (+) 678 WP_005597565.1 CidB/LrgB family autolysis modulator -
  RJD38_RS14575 (RJD38_14570) cdd 3219273..3220160 (+) 888 WP_065430324.1 cytidine deaminase -
  RJD38_RS14580 (RJD38_14575) - 3220269..3221480 (-) 1212 WP_065430323.1 HD-GYP domain-containing protein -
  RJD38_RS14585 (RJD38_14580) - 3221752..3221844 (-) 93 Protein_2788 response regulator -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54753.17 Da        Isoelectric Point: 5.0073

>NTDB_id=879578 RJD38_RS14560 WP_005597561.1 3216575..3217999(+) (sbcB) [Vibrio scophthalmi strain 20FBVib0200]
MQQEHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPGVEAALITGISPQLAASKGLIEP
EFIRQIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFFDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENDEGYI
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKIKAAQPKLFDYFLTMRHKRKLNELVDIVNMTPLMHVSGMLGRECNY
TSWIVPVAWHPTNKNAVIVVDLAKDPQVLFDLDENALKERLYTKHSDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAD
KIGIDREQCLQNLQVLRQHPEIREKLIGLFAVEREYEKSADVDTQLYDGFFSPADRAAMDIVRQTEPEHLAALDITFSDA
RIEPLLFRYRARNFPWTLTEQEQLRWNSHCQDYFQSRMDEYMLNFENLVHEHESDTKKITLLKSVYQYVEKLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=879578 RJD38_RS14560 WP_005597561.1 3216575..3217999(+) (sbcB) [Vibrio scophthalmi strain 20FBVib0200]
ATGCAACAAGAGCACCAACCGACGTTTTTCTTCTTCGATTATGAAACGTGGGGAACCAGCCCAGCCAAAGATCGCCCAAG
CCAATTTGCGGGAGTACGCACGGACATGGACTTTAATATTATTGGCGAGCCTCTTGTCATCTATTGCCAACCACCCTCAG
ACTATTTGCCAGGAGTGGAAGCGGCACTGATTACCGGCATTTCTCCCCAACTGGCTGCAAGTAAAGGCCTGATCGAGCCT
GAATTTATCCGCCAAATTCATGAACAATTGGCAACGCCAAACACGATTAGCCTTGGTTACAATAGTATTCGTTTTGATGA
CGAAGTAACGCGCTATACTTGTTACCGCAATTTCTTTGACCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGTTGGG
ACTTACTCGATGTGATGCGTGCTTGCCATGCTTTACGCCCTGAAGGTATTGAATGGCCAGAAAACGACGAAGGCTATATT
AGCTTCAAACTTGAGCACCTTTCTGTGGCAAACGGCATTGAACACGCCAATGCGCACGATGCGATGGCTGATGTTATCGC
CACAATCGAACTGGCAAAAAAAATCAAAGCCGCACAACCAAAACTGTTTGATTACTTCCTTACCATGCGTCATAAGCGCA
AGCTCAACGAATTGGTCGATATCGTCAATATGACCCCGCTGATGCATGTCTCGGGAATGCTTGGCCGTGAATGCAACTAT
ACCAGCTGGATTGTGCCTGTCGCTTGGCACCCAACCAATAAAAATGCAGTTATTGTGGTTGATCTCGCCAAAGATCCGCA
AGTATTGTTCGATCTGGATGAGAATGCGTTGAAAGAGCGCCTATATACCAAACACAGTGATTTGGCTCCTGATGAGTTGC
CCGTTCCTGTGAAGCTGGTGCATTTGAACAAATGTCCGATTCTTGCCCCTGCGAAAACACTGACGGCAGAAAATGCCGAC
AAGATTGGTATCGATCGTGAACAGTGCTTACAAAACTTACAAGTGCTCCGTCAACACCCAGAGATCCGAGAAAAATTGAT
TGGCTTGTTCGCTGTTGAACGTGAATATGAAAAGAGCGCTGACGTTGATACTCAACTTTATGATGGATTCTTTTCACCCG
CGGATCGCGCTGCGATGGACATTGTTCGTCAAACCGAACCTGAGCACTTAGCGGCGCTTGATATCACCTTCAGCGATGCG
CGTATCGAACCGCTATTGTTCCGTTATCGTGCGCGTAACTTCCCATGGACACTCACCGAGCAAGAACAACTTCGTTGGAA
TAGCCACTGCCAGGACTACTTCCAAAGTCGCATGGACGAGTACATGCTAAATTTTGAAAACTTAGTTCACGAACATGAAA
GTGATACAAAGAAAATCACTCTATTAAAATCTGTGTATCAATACGTAGAGAAGCTTGTTTCGTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9RRT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

99.789

0.791