Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   RIM64_RS07780 Genome accession   NZ_CP133951
Coordinates   1628410..1628928 (-) Length   172 a.a.
NCBI ID   WP_269206928.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain JMC111     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623410..1633928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM64_RS07760 (RIM64_07760) nrdI 1624933..1625343 (-) 411 WP_014622448.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  RIM64_RS07765 (RIM64_07765) nrdF 1625345..1626358 (-) 1014 WP_012678369.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  RIM64_RS07770 (RIM64_07770) - 1626816..1627052 (-) 237 WP_024273149.1 hypothetical protein -
  RIM64_RS07775 (RIM64_07775) - 1627561..1628322 (-) 762 WP_282884772.1 HlyD family efflux transporter periplasmic adaptor subunit -
  RIM64_RS07780 (RIM64_07780) comB 1628410..1628928 (-) 519 WP_269206928.1 hypothetical protein Regulator
  RIM64_RS07785 (RIM64_07785) comA 1628943..1631096 (-) 2154 WP_115267067.1 peptide cleavage/export ABC transporter ComA Regulator
  RIM64_RS07790 (RIM64_07790) - 1631323..1631490 (-) 168 WP_012515168.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  RIM64_RS07795 (RIM64_07795) - 1631513..1631659 (-) 147 WP_021320464.1 hypothetical protein -
  RIM64_RS07800 (RIM64_07800) - 1631673..1631831 (-) 159 WP_021320463.1 hypothetical protein -
  RIM64_RS07805 (RIM64_07805) - 1631944..1632084 (-) 141 WP_012515166.1 hypothetical protein -
  RIM64_RS07810 (RIM64_07810) - 1632424..1633317 (-) 894 WP_115267068.1 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19738.09 Da        Isoelectric Point: 5.2082

>NTDB_id=877722 RIM64_RS07780 WP_269206928.1 1628410..1628928(-) (comB) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MNNNILESAEFYNRRYHNFSSRVILPTLLLFLFGVFFLAFAKKEISIISTATVEPNIILSNIQSTSNNTILTNNLKDNKY
VKFGDLLIKYDSRKEGIQQETYQTQLNNLQIQKEQLELLKASIEAGNSQFPEKDNYGYYQTFIDYLNQINTLSANVNQQN
ENVSSQNTAASN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=877722 RIM64_RS07780 WP_269206928.1 1628410..1628928(-) (comB) [Streptococcus equi subsp. zooepidemicus strain JMC111]
ATGAATAACAATATATTAGAAAGTGCGGAATTTTATAACCGTCGTTACCACAACTTTTCTAGTCGTGTCATTCTACCTAC
TTTGCTGCTTTTCTTGTTTGGTGTTTTCTTCCTAGCATTTGCAAAGAAAGAAATTTCTATTATTTCAACTGCAACAGTTG
AACCAAATATAATTCTTTCCAATATTCAATCTACAAGTAATAATACAATATTAACCAATAATCTAAAAGATAATAAATAT
GTCAAATTTGGAGACTTATTGATAAAATATGATTCAAGAAAAGAAGGTATTCAACAAGAGACCTATCAAACTCAATTAAA
TAATTTACAAATCCAAAAAGAACAGTTAGAGCTATTAAAAGCAAGTATTGAAGCTGGAAACAGTCAATTTCCAGAAAAAG
ATAATTATGGATATTATCAAACATTTATTGACTACTTAAATCAGATAAACACCTTATCAGCCAATGTAAATCAGCAAAAT
GAAAATGTCTCTTCACAAAATACTGCAGCTAGCAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mitis SK321

55.556

99.419

0.552
  comB Streptococcus pneumoniae TIGR4

55.556

99.419

0.552
  comB Streptococcus pneumoniae Rx1

55.556

99.419

0.552
  comB Streptococcus pneumoniae D39

55.556

99.419

0.552
  comB Streptococcus pneumoniae R6

55.556

99.419

0.552
  comB Streptococcus mitis NCTC 12261

54.971

99.419

0.547
  comB Streptococcus gordonii str. Challis substr. CH1

52.047

99.419

0.517