Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RIM62_RS09950 Genome accession   NZ_CP133950
Coordinates   2079295..2079690 (-) Length   131 a.a.
NCBI ID   WP_115267196.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain ZHZ211     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2074295..2084690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM62_RS09930 (RIM62_09930) - 2075085..2075888 (-) 804 WP_115267194.1 ABC transporter ATP-binding protein -
  RIM62_RS09935 (RIM62_09935) - 2075897..2076781 (-) 885 WP_012516414.1 ABC transporter permease -
  RIM62_RS09940 (RIM62_09940) - 2076889..2077851 (-) 963 WP_043041201.1 ABC transporter substrate-binding protein -
  RIM62_RS09945 (RIM62_09945) - 2077878..2078843 (-) 966 WP_115267195.1 ABC transporter substrate-binding protein -
  RIM62_RS09950 (RIM62_09950) ssbA 2079295..2079690 (-) 396 WP_115267196.1 single-stranded DNA-binding protein Machinery gene
  RIM62_RS09955 (RIM62_09955) ytpR 2080278..2080904 (-) 627 WP_115267197.1 YtpR family tRNA-binding protein -
  RIM62_RS09960 (RIM62_09960) - 2080919..2081236 (-) 318 WP_012516420.1 thioredoxin family protein -
  RIM62_RS09965 (RIM62_09965) - 2081233..2081517 (-) 285 WP_021321209.1 DUF4651 domain-containing protein -
  RIM62_RS09970 (RIM62_09970) pepA 2081912..2082979 (+) 1068 WP_115267198.1 glutamyl aminopeptidase -
  RIM62_RS09975 (RIM62_09975) proC 2083063..2083836 (+) 774 WP_115267199.1 pyrroline-5-carboxylate reductase -
  RIM62_RS09980 (RIM62_09980) - 2084071..2084508 (-) 438 WP_165619192.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14755.93 Da        Isoelectric Point: 8.9315

>NTDB_id=877669 RIM62_RS09950 WP_115267196.1 2079295..2079690(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
MYNKVILIGRLVAKPELTKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINVVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFATEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEEKLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=877669 RIM62_RS09950 WP_115267196.1 2079295..2079690(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain ZHZ211]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAACCAAGACATTAACGGATAAGCAGGTCGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTTGATTTTATCAATGTTGTTGCTT
GGGGAGGCTTGGCTGAAACCTTGGCTTCCTATGCTAGCAAGGGGAGTCTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCGGGTCAGACTCATTTTGCGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGAGCTATACGTGAAAACAACGCTGCTAATGATTTGATTGATTTGGCTTTAGAGGAGGAAAAGCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB/cilA Streptococcus mitis NCTC 12261

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

43.59

89.313

0.389