Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   R0C96_RS30370 Genome accession   NZ_CP150132
Coordinates   6437134..6437757 (-) Length   207 a.a.
NCBI ID   WP_003095838.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PSA9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6432134..6442757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0C96_RS30350 (R0C96_0030350) aroB 6432729..6433835 (-) 1107 WP_003095831.1 3-dehydroquinate synthase -
  R0C96_RS30355 (R0C96_0030355) aroK 6433885..6434403 (-) 519 WP_003095833.1 shikimate kinase AroK -
  R0C96_RS30360 (R0C96_0030360) pilQ 6434415..6436559 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  R0C96_RS30365 (R0C96_0030365) comL/pilP 6436613..6437137 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  R0C96_RS30370 (R0C96_0030370) pilO 6437134..6437757 (-) 624 WP_003095838.1 type 4a pilus biogenesis protein PilO Machinery gene
  R0C96_RS30375 (R0C96_0030375) pilN 6437754..6438350 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  R0C96_RS30380 (R0C96_0030380) pilM 6438350..6439414 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  R0C96_RS30385 (R0C96_0030385) - 6439599..6442070 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22805.23 Da        Isoelectric Point: 4.7787

>NTDB_id=877052 R0C96_RS30370 WP_003095838.1 6437134..6437757(-) (pilO) [Pseudomonas aeruginosa strain PSA9]
MSLASSLESLRKIDVNDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLSDMQAQLEQQAAEEETLKQQFSTKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPVAPGSTSKLRMSILAKTYRYNDKGLKK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=877052 R0C96_RS30370 WP_003095838.1 6437134..6437757(-) (pilO) [Pseudomonas aeruginosa strain PSA9]
ATGAGTCTGGCCAGTTCCCTGGAAAGTCTGCGCAAGATCGACGTAAACGACCTCGATCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGGTACAACTTCCATCTGAGCGACA
TGCAGGCTCAGCTCGAACAGCAGGCCGCGGAAGAGGAGACGCTCAAGCAGCAGTTCTCCACCAAGGCCTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAGGAGATGGAAGAGTCCTTCGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGCCTGGGCAGCGGCCTTGAGTTCGAGGAAATCAAGCTGCTTC
CCGAGGTTGCCCAGCAGTTCTACATCGAGCTGCCGATCCAGATCAGCGTGGTCGGCGGCTACCACGACCTGGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTCACCCTGCATGACTTCGAGATCAAGCCGGTCGCGCCCGGCAGCACGTC
CAAGCTGCGCATGAGCATCCTGGCCAAGACCTATCGCTACAACGACAAGGGGCTGAAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

46.114

93.237

0.43
  pilO Acinetobacter baumannii D1279779

44.211

91.787

0.406
  comO/pilO Acinetobacter baylyi ADP1

43.684

91.787

0.401