Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RFN60_RS12195 Genome accession   NZ_CP133653
Coordinates   2392636..2392971 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain CP38     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2387636..2397971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS12175 (RFN60_12175) gcvT 2388228..2389316 (-) 1089 WP_029317919.1 glycine cleavage system aminomethyltransferase GcvT -
  RFN60_RS12180 (RFN60_12180) hepAA 2389758..2391431 (+) 1674 WP_029726726.1 DEAD/DEAH box helicase -
  RFN60_RS12185 (RFN60_12185) yqhG 2391452..2392246 (+) 795 WP_003230200.1 YqhG family protein -
  RFN60_RS12190 (RFN60_12190) sinI 2392429..2392602 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  RFN60_RS12195 (RFN60_12195) sinR 2392636..2392971 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  RFN60_RS12200 (RFN60_12200) tasA 2393064..2393849 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  RFN60_RS12205 (RFN60_12205) sipW 2393913..2394485 (-) 573 WP_003230181.1 signal peptidase I SipW -
  RFN60_RS12210 (RFN60_12210) tapA 2394469..2395230 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  RFN60_RS12215 (RFN60_12215) yqzG 2395502..2395828 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  RFN60_RS12220 (RFN60_12220) spoIITA 2395870..2396049 (-) 180 WP_029726723.1 YqzE family protein -
  RFN60_RS12225 (RFN60_12225) comGG 2396121..2396495 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  RFN60_RS12230 (RFN60_12230) comGF 2396496..2396879 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  RFN60_RS12235 (RFN60_12235) comGE 2396905..2397252 (-) 348 WP_021480020.1 ComG operon protein 5 Machinery gene
  RFN60_RS12240 (RFN60_12240) comGD 2397236..2397667 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  RFN60_RS12245 (RFN60_12245) comGC 2397657..2397953 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=875574 RFN60_RS12195 WP_003226345.1 2392636..2392971(+) (sinR) [Bacillus subtilis strain CP38]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=875574 RFN60_RS12195 WP_003226345.1 2392636..2392971(+) (sinR) [Bacillus subtilis strain CP38]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1