Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   V8N34_RS03015 Genome accession   NZ_CP149804
Coordinates   623543..624346 (+) Length   267 a.a.
NCBI ID   WP_029172537.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 618543..629346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS02990 (V8N34_02990) - 618971..619669 (-) 699 WP_004298848.1 amino acid ABC transporter permease -
  V8N34_RS02995 (V8N34_02995) - 619684..620523 (-) 840 WP_024382220.1 transporter substrate-binding domain-containing protein -
  V8N34_RS03000 (V8N34_03000) - 620534..621295 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  V8N34_RS03005 (V8N34_03005) yycF 621490..622194 (+) 705 WP_002935840.1 response regulator YycF -
  V8N34_RS03010 (V8N34_03010) micB 622187..623536 (+) 1350 WP_053867001.1 cell wall metabolism sensor histidine kinase VicK Regulator
  V8N34_RS03015 (V8N34_03015) vicX 623543..624346 (+) 804 WP_029172537.1 MBL fold metallo-hydrolase Regulator
  V8N34_RS03020 (V8N34_03020) - 625067..626089 (+) 1023 WP_172091467.1 IS30 family transposase -
  V8N34_RS03025 (V8N34_03025) - 626261..627463 (-) 1203 Protein_546 IS110 family transposase -
  V8N34_RS03030 (V8N34_03030) - 627742..628275 (+) 534 WP_232088998.1 ATP-binding cassette domain-containing protein -
  V8N34_RS03035 (V8N34_03035) - 628251..629119 (+) 869 Protein_548 MobA/MobL family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29687.77 Da        Isoelectric Point: 5.7755

>NTDB_id=875475 V8N34_RS03015 WP_029172537.1 623543..624346(+) (vicX) [Streptococcus suis strain YA]
MIGKGFNYSILASGSSGNCFYLETDRKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=875475 V8N34_RS03015 WP_029172537.1 623543..624346(+) (vicX) [Streptococcus suis strain YA]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAGAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAATCTCAA
ACAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGTGTTGGAGTAGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACTAAGAT
TTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772