Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   RE735_RS00535 Genome accession   NZ_CP133585
Coordinates   102368..103480 (-) Length   370 a.a.
NCBI ID   WP_007497487.1    Uniprot ID   A0A9X0KBN2
Organism   Bacillus aerius strain NEB1378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 97368..108480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE735_RS00520 (RE735_00520) gyrA 97401..99896 (-) 2496 WP_309174163.1 DNA gyrase subunit A -
  RE735_RS00525 (RE735_00525) gyrB 100131..102047 (-) 1917 WP_309175437.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  RE735_RS00530 (RE735_00530) remB 102105..102350 (-) 246 WP_309174164.1 extracellular matrix regulator RemB -
  RE735_RS00535 (RE735_00535) recF 102368..103480 (-) 1113 WP_007497487.1 DNA replication/repair protein RecF Machinery gene
  RE735_RS00540 (RE735_00540) yaaA 103497..103712 (-) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  RE735_RS00545 (RE735_00545) dnaN 103863..104999 (-) 1137 WP_309174165.1 DNA polymerase III subunit beta -
  RE735_RS00550 (RE735_00550) dnaA 105196..106536 (-) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  RE735_RS00555 (RE735_00555) rpmH 107156..107290 (+) 135 WP_008360908.1 50S ribosomal protein L34 -
  RE735_RS00560 (RE735_00560) rnpA 107369..107728 (+) 360 WP_008347592.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42574.65 Da        Isoelectric Point: 7.1297

>NTDB_id=875084 RE735_RS00535 WP_007497487.1 102368..103480(-) (recF) [Bacillus aerius strain NEB1378]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=875084 RE735_RS00535 WP_007497487.1 102368..103480(-) (recF) [Bacillus aerius strain NEB1378]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCTTTGAACACCATCATGTTTGCACCAGAGGATCTCAGTCTTGTGAAAGGTAGTCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCAATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGTCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.198

99.73

0.83