Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RDV58_RS01115 Genome accession   NZ_CP133475
Coordinates   208308..208889 (+) Length   193 a.a.
NCBI ID   WP_002280384.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 203308..213889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS01090 (RDV58_01090) - 203647..204615 (+) 969 WP_002263139.1 ribose-phosphate diphosphokinase -
  RDV58_RS01095 (RDV58_01095) - 204704..205879 (+) 1176 WP_002263138.1 pyridoxal phosphate-dependent aminotransferase -
  RDV58_RS01100 (RDV58_01100) recO 205869..206624 (+) 756 WP_002263137.1 DNA repair protein RecO -
  RDV58_RS01105 (RDV58_01105) plsX 206832..207830 (+) 999 WP_002280386.1 phosphate acyltransferase PlsX -
  RDV58_RS01110 (RDV58_01110) - 207832..208080 (+) 249 WP_002280385.1 acyl carrier protein -
  RDV58_RS01115 (RDV58_01115) comA 208308..208889 (+) 582 WP_002280384.1 ATP-binding cassette domain-containing protein Regulator
  RDV58_RS01120 (RDV58_01120) purC 209011..209718 (+) 708 WP_002263133.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RDV58_RS01125 (RDV58_01125) - 209728..213453 (+) 3726 WP_002280383.1 phosphoribosylformylglycinamidine synthase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21343.32 Da        Isoelectric Point: 5.0569

>NTDB_id=874562 RDV58_RS01115 WP_002280384.1 208308..208889(+) (comA) [Streptococcus mutans strain LMG 14558]
MGKSGSGKTTLAKILAGYYTVSSGDSFLDGEKINYSQLRQLVTYVPQQSYVFTGTILDNLLLGAEEEVTDDRLMEVCSIA
EILDNIKAMPLGFQTQISEDGGLSGGQKQRLAIARALLTRQPVLIFDEATSGLDRDTEEKVIANLSKLNRTIIFIAHRGS
VSYYADRIVEIDSGEKIKDRINHRPFSFLMTTL

Nucleotide


Download         Length: 582 bp        

>NTDB_id=874562 RDV58_RS01115 WP_002280384.1 208308..208889(+) (comA) [Streptococcus mutans strain LMG 14558]
ATGGGGAAAAGTGGTTCTGGAAAGACAACTTTGGCAAAAATTCTTGCAGGCTATTATACTGTTAGTAGCGGTGACTCTTT
CTTAGATGGAGAAAAGATAAATTATTCCCAGCTGCGCCAATTAGTAACTTATGTGCCACAGCAGTCTTATGTTTTTACAG
GAACAATCTTAGATAATCTGCTTCTTGGTGCTGAAGAGGAAGTAACGGATGATCGCTTAATGGAAGTTTGTTCAATTGCT
GAAATTTTAGACAATATCAAGGCAATGCCTTTAGGTTTTCAAACACAGATTTCAGAAGACGGAGGTTTATCTGGTGGTCA
AAAACAGCGTTTAGCTATTGCACGTGCTCTCTTAACCAGACAGCCTGTGTTGATTTTTGATGAGGCAACTAGTGGTTTAG
ATCGTGATACCGAAGAAAAAGTTATTGCCAATTTATCTAAATTGAATCGCACGATTATTTTTATTGCTCACCGAGGCAGT
GTTTCTTATTATGCTGATCGAATTGTTGAGATTGACTCTGGAGAGAAAATTAAGGACAGAATAAATCATCGTCCTTTCTC
ATTTTTGATGACGACTCTTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(1-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

50.802

96.891

0.492
  comA Streptococcus gordonii str. Challis substr. CH1

51.099

94.301

0.482
  comA/nlmT Streptococcus mutans UA159

48.936

97.409

0.477
  comA Streptococcus pneumoniae D39

49.18

94.819

0.466
  comA Streptococcus pneumoniae Rx1

49.18

94.819

0.466
  comA Streptococcus pneumoniae R6

49.18

94.819

0.466
  comA Streptococcus mitis SK321

48.087

94.819

0.456
  comA Streptococcus pneumoniae TIGR4

48.087

94.819

0.456