Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   WJ054_RS09905 Genome accession   NZ_CP149485
Coordinates   2007412..2007861 (-) Length   149 a.a.
NCBI ID   WP_003053369.1    Uniprot ID   A0ABU0A4B8
Organism   Streptococcus dysgalactiae subsp. equisimilis strain STG643     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2002412..2012861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ054_RS09885 (WJ054_09870) - 2002485..2002931 (-) 447 WP_003053378.1 dUTP diphosphatase -
  WJ054_RS09890 (WJ054_09875) - 2003039..2003806 (-) 768 WP_014612596.1 epoxyqueuosine reductase QueH -
  WJ054_RS09895 (WJ054_09880) - 2003926..2005710 (-) 1785 WP_084916675.1 ABC transporter ATP-binding protein -
  WJ054_RS09900 (WJ054_09885) rcrP 2005710..2007419 (-) 1710 WP_003053361.1 ABC transporter ATP-binding protein Regulator
  WJ054_RS09905 (WJ054_09890) rcrR 2007412..2007861 (-) 450 WP_003053369.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  WJ054_RS09910 (WJ054_09895) - 2008062..2009078 (+) 1017 WP_003053365.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  WJ054_RS09915 (WJ054_09900) hasC 2009110..2010012 (+) 903 WP_003061497.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  WJ054_RS09920 (WJ054_09905) - 2010203..2010817 (+) 615 WP_065358750.1 DUF6198 family protein -
  WJ054_RS09925 (WJ054_09910) - 2010994..2011668 (-) 675 WP_065358751.1 rhomboid family intramembrane serine protease -
  WJ054_RS09930 (WJ054_09915) - 2011665..2012192 (-) 528 WP_065358752.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17415.30 Da        Isoelectric Point: 9.5972

>NTDB_id=874364 WJ054_RS09905 WP_003053369.1 2007412..2007861(-) (rcrR) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
MSRVIADLRELTHQVEQISDEIAKKYDLEHLAGPQGHVLVFLSKHQDQEIFVKDIEKELQISKSVTSNLVKRMVKNGFIK
VLPSQVDKRYKQVILAKAGREKLPLLQECRKDIEHYFFKEITREELLTVKKVIQQLKQNMLTYKGENDA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=874364 WJ054_RS09905 WP_003053369.1 2007412..2007861(-) (rcrR) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
ATGTCACGAGTAATTGCAGATTTGCGTGAGTTGACACATCAGGTTGAACAAATTAGCGATGAAATTGCAAAGAAATATGA
CCTTGAACATTTAGCAGGACCCCAGGGACACGTTTTGGTTTTTCTATCCAAGCATCAAGATCAAGAAATTTTTGTGAAGG
ACATTGAAAAAGAACTCCAAATTTCAAAATCAGTTACCAGTAATCTTGTTAAACGCATGGTCAAAAATGGTTTTATTAAG
GTTCTTCCTTCCCAAGTAGACAAGCGCTACAAGCAAGTCATTTTGGCTAAGGCAGGACGAGAGAAGCTGCCTTTGTTGCA
AGAATGTCGTAAGGATATTGAACATTATTTCTTTAAAGAAATCACGAGAGAGGAGTTGCTGACGGTTAAAAAGGTGATTC
AGCAGCTTAAGCAAAATATGCTAACTTATAAAGGAGAGAACGATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

45.714

93.96

0.43