Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   WDR05_RS02410 Genome accession   NZ_CP149444
Coordinates   475347..475781 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain HC-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470347..480781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS02380 (WDR05_02390) ydaD 470997..471857 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  WDR05_RS02385 (WDR05_02395) lyxE 471873..472376 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  WDR05_RS02390 (WDR05_02400) ydaF 472462..473013 (+) 552 WP_003246691.1 GNAT family N-acetyltransferase -
  WDR05_RS02395 (WDR05_02405) ydaG 473091..473513 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  WDR05_RS02400 (WDR05_02410) amj 474019..474828 (+) 810 WP_003234394.1 lipid II flippase Amj -
  WDR05_RS02405 (WDR05_02415) ydzA 474872..475162 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  WDR05_RS02410 (WDR05_02420) lrpC 475347..475781 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  WDR05_RS02415 (WDR05_02425) topB 475846..478029 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  WDR05_RS02420 (WDR05_02430) ephJ 478232..479320 (+) 1089 WP_113713035.1 lipoprotein YdaJ -
  WDR05_RS02425 (WDR05_02435) epsK 479301..480152 (+) 852 WP_406627082.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=873832 WDR05_RS02410 WP_003246585.1 475347..475781(+) (lrpC) [Bacillus subtilis strain HC-9]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=873832 WDR05_RS02410 WP_003246585.1 475347..475781(+) (lrpC) [Bacillus subtilis strain HC-9]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1