Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AABJ65_RS01810 Genome accession   NZ_AP027553
Coordinates   396479..397111 (-) Length   210 a.a.
NCBI ID   WP_000242761.1    Uniprot ID   -
Organism   Escherichia coli strain LR-58-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 391479..402111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ65_RS01785 (VEE07_03460) yhfG 391611..391778 (+) 168 WP_000736862.1 YhfG family protein -
  AABJ65_RS01790 (VEE07_03470) fic 391768..392370 (+) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  AABJ65_RS01795 (VEE07_03480) pabA 392402..392965 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  AABJ65_RS01800 (VEE07_03490) argD 393051..394271 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AABJ65_RS01805 (VEE07_03500) yhfK 394338..396428 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  AABJ65_RS01810 (VEE07_03510) crp 396479..397111 (-) 633 WP_000242761.1 cAMP-activated global transcriptional regulator CRP Regulator
  AABJ65_RS01815 (VEE07_03520) yhfA 397413..397817 (+) 405 WP_001148908.1 OsmC family protein -
  AABJ65_RS01820 (VEE07_03530) prkB 397872..398741 (-) 870 WP_001274680.1 phosphoribulokinase -
  AABJ65_RS01825 (VEE07_03540) yheU 398795..399013 (-) 219 WP_000907085.1 YheU family protein -
  AABJ65_RS01830 (VEE07_03550) yheT 399007..400029 (-) 1023 WP_000057356.1 hydrolase -
  AABJ65_RS01835 (VEE07_03560) yheS 400029..401942 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23644.41 Da        Isoelectric Point: 8.2710

>NTDB_id=87314 AABJ65_RS01810 WP_000242761.1 396479..397111(-) (crp) [Escherichia coli strain LR-58-1]
MVLGKTQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=87314 AABJ65_RS01810 WP_000242761.1 396479..397111(-) (crp) [Escherichia coli strain LR-58-1]
ATGGTGCTTGGCAAAACGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.238

100

0.952
  crp Haemophilus influenzae Rd KW20

78.049

97.619

0.762
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment