Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BsBEST3145_RS05565 Genome accession   NZ_AP024625
Coordinates   1082970..1083548 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain BEST3109     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1077970..1088548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BsBEST3145_RS22125 - 1078481..1078996 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  BsBEST3145_RS22130 - 1079237..1079863 (-) 627 Protein_1032 protoglobin domain-containing protein -
  BsBEST3145_RS05550 (BsBEST3109_10230) comW 1079918..1081447 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  BsBEST3145_RS05555 (BsBEST3109_10240) yhxC 1081559..1082416 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  BsBEST3145_RS05560 (BsBEST3109_10250) yhzC 1082444..1082677 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  BsBEST3145_RS05565 (BsBEST3109_10260) comK 1082970..1083548 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  BsBEST3145_RS05570 (BsBEST3109_10270) yhxD 1083595..1084494 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  BsBEST3145_RS05575 (BsBEST3109_10280) yhjA 1084711..1084980 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  BsBEST3145_RS05580 (BsBEST3109_10290) yhjB 1085023..1086492 (-) 1470 WP_003233134.1 sodium:solute symporter -
  BsBEST3145_RS05585 (BsBEST3109_10300) yhjC 1086489..1086689 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  BsBEST3145_RS05590 (BsBEST3109_10310) - 1086897..1087259 (-) 363 WP_003233132.1 hypothetical protein -
  BsBEST3145_RS05595 (BsBEST3109_10320) yhjE 1087411..1088034 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  BsBEST3145_RS05600 (BsBEST3109_10330) lepB 1088036..1088542 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=87098 BsBEST3145_RS05565 WP_003245329.1 1082970..1083548(+) (comK) [Bacillus subtilis strain BEST3109]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=87098 BsBEST3145_RS05565 WP_003245329.1 1082970..1083548(+) (comK) [Bacillus subtilis strain BEST3109]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment