Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RA292_RS08245 Genome accession   NZ_CP132912
Coordinates   1598017..1598796 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593017..1603796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS08225 trmFO 1593710..1595017 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RA292_RS08230 xerC 1595085..1595999 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  RA292_RS08235 clpQ 1596012..1596557 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  RA292_RS08240 hslU 1596574..1597977 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  RA292_RS08245 codY 1598017..1598796 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RA292_RS08250 flgB 1599176..1599565 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  RA292_RS08255 flgC 1599565..1600017 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  RA292_RS08260 fliE 1600028..1600348 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  RA292_RS08265 fliF 1600394..1602004 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  RA292_RS08270 fliG 1602017..1603033 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  RA292_RS08275 fliH 1603026..1603778 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=870642 RA292_RS08245 WP_003220850.1 1598017..1598796(+) (codY) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=870642 RA292_RS08245 WP_003220850.1 1598017..1598796(+) (codY) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467