Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RA292_RS07385 Genome accession   NZ_CP132912
Coordinates   1425773..1426051 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1420773..1431051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS07365 panEB 1421960..1422871 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  RA292_RS07370 ampS 1422905..1424137 (-) 1233 WP_003232341.1 aminopeptidase -
  RA292_RS07375 ykpC 1424247..1424381 (-) 135 WP_003238865.1 protein YkpC -
  RA292_RS07380 mreBH 1424482..1425489 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  RA292_RS07385 abrB 1425773..1426051 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  RA292_RS07390 kinC 1426241..1427527 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  RA292_RS07395 ykqA 1427543..1428370 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  RA292_RS07400 ktrC 1428433..1429098 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  RA292_RS07405 ade 1429254..1430987 (+) 1734 WP_032721495.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=870640 RA292_RS07385 WP_003244728.1 1425773..1426051(+) (abrB) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=870640 RA292_RS07385 WP_003244728.1 1425773..1426051(+) (abrB) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576