Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RA164_RS13205 Genome accession   NZ_CP132911
Coordinates   2930712..2931227 (-) Length   171 a.a.
NCBI ID   WP_329741304.1    Uniprot ID   -
Organism   Dyella aluminiiresistens strain A6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2925712..2936227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA164_RS13190 - 2926340..2927410 (+) 1071 WP_329741301.1 alpha/beta hydrolase -
  RA164_RS13195 pilR 2927494..2928927 (+) 1434 WP_329741302.1 sigma-54 dependent transcriptional regulator Regulator
  RA164_RS13200 - 2928974..2930572 (-) 1599 WP_329741303.1 tetratricopeptide repeat-containing sulfotransferase family protein -
  RA164_RS13205 ssb 2930712..2931227 (-) 516 WP_329741304.1 single-stranded DNA-binding protein Machinery gene
  RA164_RS13210 - 2931347..2932543 (-) 1197 WP_329741305.1 MFS transporter -
  RA164_RS13215 - 2932707..2933711 (+) 1005 WP_329741306.1 polyprenyl synthetase family protein -
  RA164_RS13220 - 2933731..2934525 (-) 795 WP_329741307.1 dienelactone hydrolase family protein -
  RA164_RS13225 - 2934570..2935706 (-) 1137 WP_412731108.1 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18028.76 Da        Isoelectric Point: 5.3273

>NTDB_id=870599 RA164_RS13205 WP_329741304.1 2930712..2931227(-) (ssb) [Dyella aluminiiresistens strain A6]
MARGINKVILVGNLGADPEVRYSAGGTAIASLRIATSESWMDKQSGERQERTEWHRVKLFGRLAEIAGEYLKKGRQVYIE
GSLRTDKYTGQDGVERYSTDIIGNEMQMLGGNEGGGGGGGGFQRERPQGGSRQGNYGGGGSGGGFGGGSQQRAPAPPPAD
NGGFEDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=870599 RA164_RS13205 WP_329741304.1 2930712..2931227(-) (ssb) [Dyella aluminiiresistens strain A6]
ATGGCACGTGGCATCAACAAGGTCATTCTCGTCGGCAACCTGGGTGCCGATCCCGAGGTCCGCTACAGCGCGGGCGGTAC
CGCCATCGCCAGCCTGCGCATCGCCACCTCCGAATCGTGGATGGACAAGCAGAGCGGCGAGCGCCAGGAGCGCACCGAGT
GGCACCGCGTCAAGCTGTTCGGCCGCCTTGCCGAGATCGCTGGCGAATACCTGAAGAAGGGTCGCCAGGTCTATATCGAG
GGTTCGCTGCGCACCGACAAGTACACCGGCCAGGACGGTGTCGAGCGCTACAGCACCGACATCATCGGCAACGAAATGCA
GATGCTGGGCGGCAACGAAGGTGGTGGCGGTGGCGGCGGTGGATTCCAGCGCGAACGTCCGCAGGGCGGCTCCCGTCAGG
GCAACTACGGTGGCGGCGGCAGTGGTGGTGGATTCGGTGGCGGATCGCAGCAGCGCGCGCCCGCGCCGCCGCCGGCCGAC
AACGGCGGCTTCGAAGACGACGACATTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.913

100

0.526
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.503
  ssb Neisseria meningitidis MC58

47.727

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.491
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.831

100

0.363