Detailed information NTG0870311

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RA204_RS23140
• Genome accession: NZ_CP132705
• Coordinates: 4634438..4635238 (+)
• Length: 266 a.a.
• NCBI ID: WP_228365883.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 5890
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4629438..4640238

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA204_RS23105 (RA204_23095)	gspH	4629594..4630109 (+)	516	WP_032435598.1	type II secretion system minor pseudopilin GspH	-
RA204_RS23110 (RA204_23100)	gspI	4630106..4630471 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
RA204_RS23115 (RA204_23105)	gspJ	4630468..4631064 (+)	597	WP_032435596.1	type II secretion system minor pseudopilin GspJ	-
RA204_RS23120 (RA204_23110)	gspK	4631061..4632047 (+)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
RA204_RS23125 (RA204_23115)	gspL	4632034..4633227 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
RA204_RS23130 (RA204_23120)	-	4633220..4633705 (+)	486	WP_004145896.1	type II secretion system protein M	-
RA204_RS23135 (RA204_23125)	-	4633695..4634441 (+)	747	WP_004145897.1	type II secretion system protein N	-
RA204_RS23140 (RA204_23130)	pilD	4634438..4635238 (+)	801	WP_228365883.1	A24 family peptidase	Machinery gene
RA204_RS23145 (RA204_23135)	hrpB	4635286..4637715 (-)	2430	WP_032435594.1	ATP-dependent helicase HrpB	-
RA204_RS23150 (RA204_23140)	thpR	4637788..4638324 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
RA204_RS23155 (RA204_23145)	sfsA	4638324..4639040 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
RA204_RS23160 (RA204_23150)	dksA	4639203..4639658 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29365.99 Da
• Isoelectric Point: 8.4743

>NTDB_id=870311 RA204_RS23140 WP_228365883.1 4634438..4635238(+) (pilD) [Klebsiella pneumoniae strain 5890]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDCLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=870311 RA204_RS23140 WP_228365883.1 4634438..4635238(+) (pilD) [Klebsiella pneumoniae strain 5890]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGGCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATTGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425