Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RAM45_RS08055 Genome accession   NZ_CP132393
Coordinates   1691123..1692010 (-) Length   295 a.a.
NCBI ID   WP_015729041.1    Uniprot ID   A0A8H9BY74
Organism   Staphylococcus pseudintermedius strain CUVET17-450     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1686123..1697010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAM45_RS08040 (RAM45_07990) xerC 1686627..1687538 (-) 912 WP_015729043.1 tyrosine recombinase XerC -
  RAM45_RS08045 (RAM45_07995) trmFO 1687638..1688942 (-) 1305 WP_015729042.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RAM45_RS08050 (RAM45_08000) topA 1688970..1691039 (-) 2070 WP_014614088.1 type I DNA topoisomerase -
  RAM45_RS08055 (RAM45_08005) dprA 1691123..1692010 (-) 888 WP_015729041.1 DNA-processing protein DprA Machinery gene
  RAM45_RS08060 (RAM45_08010) sucD 1692249..1693154 (-) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  RAM45_RS08065 (RAM45_08015) sucC 1693176..1694342 (-) 1167 WP_014614091.1 ADP-forming succinate--CoA ligase subunit beta -
  RAM45_RS08070 (RAM45_08020) - 1694609..1694884 (-) 276 WP_014614092.1 hypothetical protein -
  RAM45_RS08075 (RAM45_08025) - 1694976..1695761 (-) 786 WP_014614093.1 ribonuclease HII -
  RAM45_RS08080 (RAM45_08030) ylqF 1695754..1696626 (-) 873 WP_014614094.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33464.96 Da        Isoelectric Point: 8.4807

>NTDB_id=869030 RAM45_RS08055 WP_015729041.1 1691123..1692010(-) (dprA) [Staphylococcus pseudintermedius strain CUVET17-450]
MKQLLLLLLYAGFSTQQIQSCYPKLCALTGNLPQRIQAFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSANSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLSEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=869030 RAM45_RS08055 WP_015729041.1 1691123..1692010(-) (dprA) [Staphylococcus pseudintermedius strain CUVET17-450]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTGTTACCCTAAACTTTGTGC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCAATGCTTTCGCACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTGCTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGTTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

98.305

0.498
  dprA Staphylococcus aureus N315

50.345

98.305

0.495