Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   RAB71_RS05890 Genome accession   NZ_CP132343
Coordinates   1378669..1379727 (+) Length   352 a.a.
NCBI ID   WP_010341533.1    Uniprot ID   A0A2P5Z007
Organism   Xanthomonas sacchari strain CFBP4641     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1373669..1384727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB71_RS05875 (RAB71_05875) - 1373779..1375068 (+) 1290 WP_010341536.1 citrate synthase -
  RAB71_RS05880 (RAB71_05880) - 1375226..1375870 (-) 645 WP_010341535.1 hypothetical protein -
  RAB71_RS05885 (RAB71_05885) - 1376024..1378450 (-) 2427 WP_010341534.1 penicillin-binding protein 1A -
  RAB71_RS05890 (RAB71_05890) pilM 1378669..1379727 (+) 1059 WP_010341533.1 pilus assembly protein PilM Machinery gene
  RAB71_RS05895 (RAB71_05895) - 1379727..1380509 (+) 783 WP_104609592.1 PilN domain-containing protein -
  RAB71_RS05900 (RAB71_05900) - 1380506..1381180 (+) 675 WP_010340866.1 type 4a pilus biogenesis protein PilO -
  RAB71_RS05905 (RAB71_05905) - 1381177..1381716 (+) 540 WP_010340868.1 pilus assembly protein PilP -
  RAB71_RS05910 (RAB71_05910) - 1381737..1383656 (+) 1920 WP_029561812.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37723.36 Da        Isoelectric Point: 4.4501

>NTDB_id=868290 RAB71_RS05890 WP_010341533.1 1378669..1379727(+) (pilM) [Xanthomonas sacchari strain CFBP4641]
MGLIPKSQQPLIGIDISSTAVKLLQLSRNGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRAKHAAAA
VAGSAVITKVIPMPAELDENELEAQVELEAVNYIPYPIDEVNLDFEVLGVIPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADGIVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=868290 RAB71_RS05890 WP_010341533.1 1378669..1379727(+) (pilM) [Xanthomonas sacchari strain CFBP4641]
GTGGGGCTTATCCCAAAGAGTCAGCAGCCGCTGATCGGCATCGACATCAGCTCGACCGCGGTCAAGCTGCTGCAGCTTTC
GCGTAACGGCAACCGGTTCCGCGTCGAGCATTACGCCGTCGAACCCTTGCCGCCCAATGCCGTGGTCGAAAAGAACATCG
TCGAGGTCGAGGCGGTGGGCGAGGCGATCCGCCGCGCCGTGACCCGCTCCGGTACCCGCGCCAAGCATGCCGCGGCCGCC
GTGGCCGGCTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTGGACGAGAACGAGCTGGAAGCCCAGGTCGA
GCTGGAGGCGGTGAACTACATCCCGTATCCGATCGACGAAGTGAACCTGGATTTCGAGGTGCTGGGCGTCATCCCCAACA
ACCCCGAGATGGTGCAGGTGCTGCTGGCGGCCTCGCGCTCGGAGAACGTGGAACTGCGCCAGTCGGCCCTGGAACTGGGC
GGTCTGGTGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCGCTGGTGGCCAGCGAGCTGCCGGT
GGCCGCCGACGGCATCGTCGCCCTGGTCGACATCGGCGCCACCATGACCACCCTCAACGTCCTGCGCGGCGGGCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAACTGACCGACGAAGTGATGCGCCGCTACGGCCTGACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAGAGCTACGAGGTCGAGGTGCTGGAACCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGTAGCGAATTCAACCGGGTCGACCACATCGTCCTGGCCGGCG
GCTGCGCCGCCCTGGCCGGGCTGCCGGAGATGGTGGAGGAGCAACTGGGCGTGGCCACGGTGGTCGCCAACCCGTTGGCG
CAGATGACCCTGGGGCCGAAGGTGCAGGCGCATGCGCTGGCCCAGGACGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P5Z007

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.42

100

0.514
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

49.716

100

0.497
  pilM Legionella pneumophila strain ERS1305867

47.714

99.432

0.474