Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHP79_RS06025 Genome accession   NZ_CP148221
Coordinates   1177960..1178508 (+) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0052     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1172960..1183508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP79_RS05990 (WHP79_05990) - 1173150..1173575 (+) 426 WP_002859154.1 GNAT family N-acetyltransferase -
  WHP79_RS05995 (WHP79_05995) - 1173639..1174259 (+) 621 WP_002852938.1 NAD(P)H-dependent oxidoreductase -
  WHP79_RS06000 (WHP79_06000) - 1174259..1174864 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  WHP79_RS06005 (WHP79_06005) pgsA 1174989..1175525 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHP79_RS06010 (WHP79_06010) rseP 1175522..1176628 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  WHP79_RS06015 (WHP79_06015) - 1176621..1177487 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  WHP79_RS06020 (WHP79_06020) rpsF 1177574..1177951 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  WHP79_RS06025 (WHP79_06025) ssb 1177960..1178508 (+) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  WHP79_RS06030 (WHP79_06030) rpsR 1178519..1178779 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHP79_RS06035 (WHP79_06035) lon 1178839..1181214 (-) 2376 WP_002852988.1 endopeptidase La -
  WHP79_RS06040 (WHP79_06040) - 1181231..1181878 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  WHP79_RS06045 (WHP79_06045) fliW 1182039..1182428 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  WHP79_RS06050 (WHP79_06050) proC 1182428..1183159 (+) 732 WP_060816226.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP79_RS06055 (WHP79_06055) ctsT 1183156..1183458 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=868199 WHP79_RS06025 WP_002860190.1 1177960..1178508(+) (ssb) [Campylobacter jejuni strain Z1323CCJ0052]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=868199 WHP79_RS06025 WP_002860190.1 1177960..1178508(+) (ssb) [Campylobacter jejuni strain Z1323CCJ0052]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363