Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHQ12_RS00675 Genome accession   NZ_CP148213
Coordinates   118557..119105 (-) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0062     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 113557..124105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ12_RS00645 (WHQ12_00645) ctsT 113607..113909 (-) 303 WP_002853046.1 type II secretion system protein Machinery gene
  WHQ12_RS00650 (WHQ12_00650) proC 113906..114637 (-) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  WHQ12_RS00655 (WHQ12_00655) fliW 114637..115026 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  WHQ12_RS00660 (WHQ12_00660) - 115187..115834 (+) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  WHQ12_RS00665 (WHQ12_00665) lon 115851..118226 (+) 2376 WP_002853487.1 endopeptidase La -
  WHQ12_RS00670 (WHQ12_00670) rpsR 118286..118546 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHQ12_RS00675 (WHQ12_00675) ssb 118557..119105 (-) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  WHQ12_RS00680 (WHQ12_00680) rpsF 119114..119491 (-) 378 WP_060816225.1 30S ribosomal protein S6 -
  WHQ12_RS00685 (WHQ12_00685) - 119578..120443 (-) 866 Protein_136 VirK family antimicrobial peptide resistance protein -
  WHQ12_RS00690 (WHQ12_00690) rseP 120436..121542 (-) 1107 WP_060816224.1 RIP metalloprotease RseP -
  WHQ12_RS00695 (WHQ12_00695) pgsA 121539..122075 (-) 537 WP_002777068.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHQ12_RS00700 (WHQ12_00700) rdxA 122226..122831 (-) 606 WP_060816223.1 NAD(P)H-dependent oxidoreductase -
  WHQ12_RS00705 (WHQ12_00705) - 122831..123451 (-) 621 Protein_140 nitroreductase family protein -
  WHQ12_RS00710 (WHQ12_00710) - 123515..123632 (-) 118 Protein_141 N-acetyltransferase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=867911 WHQ12_RS00675 WP_002860190.1 118557..119105(-) (ssb) [Campylobacter jejuni strain Z1323CCJ0062]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=867911 WHQ12_RS00675 WP_002860190.1 118557..119105(-) (ssb) [Campylobacter jejuni strain Z1323CCJ0062]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGTGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363