Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q9L40_RS11790 Genome accession   NZ_CP132190
Coordinates   1437654..1438769 (+) Length   371 a.a.
NCBI ID   WP_305799022.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1432654..1443769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS11770 (Q9L40_11770) rsmB 1433577..1434857 (-) 1281 WP_001102799.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  Q9L40_RS11775 (Q9L40_11775) fmt 1434913..1435860 (-) 948 WP_305799024.1 methionyl-tRNA formyltransferase -
  Q9L40_RS11780 (Q9L40_11780) def 1435878..1436387 (-) 510 WP_000115010.1 peptide deformylase -
  Q9L40_RS11785 (Q9L40_11785) - 1436527..1437654 (+) 1128 WP_305799023.1 LysM peptidoglycan-binding domain-containing protein -
  Q9L40_RS11790 (Q9L40_11790) dprA 1437654..1438769 (+) 1116 WP_305799022.1 DNA-processing protein DprA Machinery gene
  Q9L40_RS11795 (Q9L40_11795) - 1438772..1439248 (+) 477 WP_000979770.1 DUF494 family protein -
  Q9L40_RS11800 (Q9L40_11800) - 1439253..1439819 (+) 567 WP_057644922.1 type I DNA topoisomerase -
  Q9L40_RS11805 (Q9L40_11805) - 1439893..1441026 (-) 1134 WP_084998701.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  Q9L40_RS11810 (Q9L40_11810) purE 1441030..1441515 (-) 486 WP_305799020.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  Q9L40_RS11815 (Q9L40_11815) - 1441682..1442239 (+) 558 WP_305799019.1 L-threonylcarbamoyladenylate synthase -
  Q9L40_RS11820 (Q9L40_11820) hemF 1442258..1443175 (+) 918 WP_142739522.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39973.95 Da        Isoelectric Point: 7.1952

>NTDB_id=867513 Q9L40_RS11790 WP_305799022.1 1437654..1438769(+) (dprA) [Vibrio cholerae strain DRC187]
MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLASGLKPEQLVFLTTQAAKQAEQCLQWRSAANNRYIV
TPHCPLYPRLLKEISSSPPVLFIEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALIWSLSEQVPYQATLFSAVQGDEELPFPEL
LANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=867513 Q9L40_RS11790 WP_305799022.1 1437654..1438769(+) (dprA) [Vibrio cholerae strain DRC187]
ATGAAAGATCAGGATTTAGCGGCATGGTTGGCGCTCTGTTTTACTCCTAAACTAGGTAGCAAAACCATTTCTCACCTGCT
TGCGACCCGTTTGCCAGCCCAGTTGCAAAGTTTTACGCCTAAGCAATGGTTGGCCAGCGGGCTTAAGCCCGAACAACTGG
TGTTTTTAACCACTCAAGCGGCTAAGCAAGCCGAGCAGTGTTTGCAATGGCGCTCAGCAGCCAATAACCGCTATATCGTC
ACTCCTCATTGCCCGCTTTACCCTCGTTTATTGAAAGAGATTAGCTCATCGCCTCCCGTCCTGTTTATTGAAGGCATATG
GGAAGCGGTGCATGACCCCGCGGTAGCTATCGTCGGTAGCCGCAATGCCAGTGTTGATGGGCGGCAGATCGCTCGCCAAT
TTGCCACTGAGCTCGCGCAGTCGGGTTTAGTGGTCACCAGTGGTTTAGCGCTTGGTATTGATGGCTATGCGCACGATGGA
GCTTTGCAAGCACAAGGGCAAACCGTAGCAGTATTAGGCTCAGGGCTGGCGCAGGTTTACCCAAAACAGCATCAAGGGTT
AGCGGAGCGAATCATCGCCCAAGGGGCCTTGGTTTCTGAGTTTGCCCCTCACACACCTCCTAAAGCCGATCACTTTCCGC
GCCGTAACCGAATTATCAGCGGCTTATCGCTGGGCGTTGTGGTGGTAGAAGCTGCGGAGAAAAGCGGCTCACTCATCACC
GCACGCTACGCCGCTGAGCAAGGGCGTGAGGTTTTTGTGGTTCCCGGATCGATTTTTAATGCCGCCAGCCAAGGTAGCAA
TCAATTGATTCGCCAAGGCGCTTGCTTGGTACAAAGTGTGCAACAAATTCATCAAGAGCTCAAAAATGCGCTGATTTGGT
CACTCTCTGAACAAGTTCCTTATCAAGCAACACTTTTTTCTGCTGTACAGGGCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAATAGAAGCTACACCTATTGATATTCTCGCAAGCCGGACCCAGATACCGGTGCAAGATATCATGAT
GCAGCTCTTGGAGCTTGAGCTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(77-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

98.922

100

0.989
  dprA Vibrio campbellii strain DS40M4

58.108

99.73

0.58
  dprA Glaesserella parasuis strain SC1401

43.883

100

0.445
  dprA Legionella pneumophila strain ERS1305867

43.316

100

0.437
  dprA Neisseria meningitidis MC58

37.845

100

0.407
  dprA Neisseria meningitidis strain C311

37.845

100

0.407
  dprA Haemophilus influenzae Rd KW20

44.745

89.757

0.402
  dprA Neisseria gonorrhoeae strain FA1090

36.658

100

0.396
  dprA Acinetobacter baumannii D1279779

43.505

89.218

0.388
  dprA Neisseria gonorrhoeae MS11

35.84

100

0.385
  dprA Acinetobacter baumannii strain A118

43.202

89.218

0.385
  dprA Acinetobacter baylyi ADP1

41.742

89.757

0.375