Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   Q8W18_RS08550 Genome accession   NZ_CP132058
Coordinates   1702094..1703344 (+) Length   416 a.a.
NCBI ID   WP_169056546.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1697094..1708344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS08525 (Q8W18_08525) ymfI 1698503..1699231 (+) 729 WP_306012155.1 elongation factor P 5-aminopentanone reductase -
  Q8W18_RS08530 (Q8W18_08530) - 1699305..1699562 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  Q8W18_RS08535 (Q8W18_08535) - 1699694..1700485 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  Q8W18_RS08540 (Q8W18_08540) - 1700509..1701420 (+) 912 WP_306012156.1 helix-turn-helix domain-containing protein -
  Q8W18_RS08545 (Q8W18_08545) pgsA 1701496..1702077 (+) 582 WP_012010018.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q8W18_RS08550 (Q8W18_08550) cinA 1702094..1703344 (+) 1251 WP_169056546.1 competence/damage-inducible protein A Machinery gene
  Q8W18_RS08555 (Q8W18_08555) recA 1703521..1704561 (+) 1041 WP_034662211.1 recombinase RecA Machinery gene
  Q8W18_RS08560 (Q8W18_08560) rny 1705062..1706624 (+) 1563 WP_003211958.1 ribonuclease Y -
  Q8W18_RS08565 (Q8W18_08565) - 1706713..1707507 (+) 795 WP_058013943.1 TIGR00282 family metallophosphoesterase -
  Q8W18_RS08570 (Q8W18_08570) spoVS 1707709..1707969 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45549.71 Da        Isoelectric Point: 4.9862

>NTDB_id=867046 Q8W18_RS08550 WP_169056546.1 1702094..1703344(+) (cinA) [Bacillus pumilus strain F12-21]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKSAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQENDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSIVCYTNKVKQQVLG
CREETLSSLGAVSKECALELAEGARKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=867046 Q8W18_RS08550 WP_169056546.1 1702094..1703344(+) (cinA) [Bacillus pumilus strain F12-21]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTTTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGCGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGAAAAGAGCTCGTGCTAAATGAAGAAGCGTTTGAATCCATTCAAGAATACTT
TCGAAAGACTGGACGAGACATGTCACCGAATAACCGGAAGCAGGCACTCGTTCTAGAAGGTTCTGATGTGCTCGTGAACC
GGTTTGGGATGGCCCCAGGTATGTTTATTCAAGAAAACGATACGTTTTATATGCTGCTTCCTGGCCCGCCAAGTGAACTG
CATCCGATGTTTGAGAACGAGGCGAAACCGCTGATATCTGAGAAACTGGGTTTAAAGGAAAAAATCGTGTCTGTTGTTCT
TCGCTTCTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACAAACCCAACGATTG
CACCGCTTGCATCTGACGGTGAAGTAACACTTAGGCTCACGGCCAAGCATGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAAACAGAAGCGAAAATTTTAGCGCGGGTAGGGGAGTACTTCTACGGGTATGGTGATACATCACTTGTCCGTGAAGC
TTCAAAGGCCTTGCACGAACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACAGGCGGAATGTTTTCAGAATGGCTGA
CAGATCTTGAAGGTGCATCGTCGATTTTAAGCGGCAGTATCGTTTGTTATACAAACAAAGTCAAACAGCAGGTGCTTGGC
TGCCGGGAAGAAACATTGTCTTCTCTTGGTGCTGTCAGCAAAGAGTGTGCTTTAGAACTTGCTGAAGGTGCTAGAAAGCT
TACGGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGACAACCGGTCGGAAAAGTGT
TCATCGGGCTATCTACGAAAGACCATACTGACGTGTTTGAATGGATGTTTACAGGAAGCCGGTCGGGCATTCGCAAGCGC
GCTGTGAAATACGGTCTGCATCACTTGCTCAATTTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.217

99.76

0.74
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

43.651

90.865

0.397