Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AABJ59_RS01935 Genome accession   NZ_AP027512
Coordinates   436822..437454 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain LR-28     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 431822..442454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ59_RS01910 (VEE31_03750) yhfG 431943..432110 (+) 168 WP_000736858.1 YhfG family protein -
  AABJ59_RS01915 (VEE31_03760) fic 432100..432702 (+) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  AABJ59_RS01920 (VEE31_03770) pabA 432734..433297 (+) 564 WP_000601837.1 aminodeoxychorismate synthase component 2 -
  AABJ59_RS01925 (VEE31_03780) argD 433383..434603 (+) 1221 WP_032172363.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AABJ59_RS01930 (VEE31_03790) yhfK 434681..436771 (-) 2091 WP_001296470.1 YccS/YhfK family putative transporter -
  AABJ59_RS01935 (VEE31_03800) crp 436822..437454 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AABJ59_RS01940 (VEE31_03810) yhfA 437756..438160 (+) 405 WP_001148908.1 OsmC family protein -
  AABJ59_RS01945 (VEE31_03820) prkB 438215..439084 (-) 870 WP_001274675.1 phosphoribulokinase -
  AABJ59_RS01950 (VEE31_03830) yheU 439138..439356 (-) 219 WP_000907085.1 YheU family protein -
  AABJ59_RS01955 (VEE31_03840) yheT 439350..440372 (-) 1023 WP_115439318.1 hydrolase -
  AABJ59_RS01960 (VEE31_03850) yheS 440372..442285 (-) 1914 WP_115439317.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=86675 AABJ59_RS01935 WP_000242755.1 436822..437454(-) (crp) [Escherichia coli strain LR-28]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=86675 AABJ59_RS01935 WP_000242755.1 436822..437454(-) (crp) [Escherichia coli strain LR-28]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAAGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment