NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	Q7574_RS17240	Genome accession	NZ_CP131867
Coordinates	3613641..3615128 (+)	Length	495 a.a.
NCBI ID	WP_342063413.1	Uniprot ID	-
Organism	Acinetobacter pittii strain 2012N08-034
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3608641..3620128

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q7574_RS17215 (Q7574_17285)	ribD	3609596..3610681 (-)	1086	WP_151283503.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-
Q7574_RS17220 (Q7574_17290)	nrdR	3610697..3611155 (-)	459	WP_000543541.1	transcriptional regulator NrdR	-
Q7574_RS17225 (Q7574_17295)	amtB	3611279..3612673 (-)	1395	WP_005079483.1	ammonium transporter	-
Q7574_RS17230 (Q7574_17300)	glnK	3612731..3613069 (-)	339	WP_000780326.1	P-II family nitrogen regulator	-
Q7574_RS17235 (Q7574_17305)	-	3613348..3613575 (+)	228	WP_002121136.1	accessory factor UbiK family protein	-
Q7574_RS17240 (Q7574_17310)	comM	3613641..3615128 (+)	1488	WP_342063413.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
Q7574_RS17245 (Q7574_17315)	-	3615227..3616582 (+)	1356	WP_069122043.1	ankyrin repeat domain-containing protein	-
Q7574_RS17250 (Q7574_17320)	-	3616890..3618323 (-)	1434	WP_069122042.1	PLP-dependent aminotransferase family protein	-
Q7574_RS17255 (Q7574_17325)	-	3618435..3619211 (+)	777	WP_151283505.1	aldolase	-
Q7574_RS17260 (Q7574_17330)	-	3619228..3620106 (+)	879	WP_151283506.1	dihydrodipicolinate synthase family protein	-

Sequence

Protein

Download Length: 495 a.a. Molecular weight: 54483.61 Da Isoelectric Point: 7.7209

                                >NTDB_id=865650 Q7574_RS17240 WP_342063413.1 3613641..3615128(+) (comM) [Acinetobacter pittii strain 2012N08-034]

MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR

LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL

KEVCDHFLGMKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN

QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE

IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE

DSTAVRQRVIYAYKQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ

SPHLTEALSYRGNHS

Nucleotide

Download Length: 1488 bp

                                >NTDB_id=865650 Q7574_RS17240 WP_342063413.1 3613641..3615128(+) (comM) [Acinetobacter pittii strain 2012N08-034]

ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTCTGATTGAAGTTGAGGTACATGTGAGTCA

AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA

TTAATAGTGGATTTCAATTTCCAACTAAAAGATTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT

CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT

TGGTGAATTAGCTTTAGATGGCCATGTAAGACCAGTATCAGGTACTTTAACTTTGGCAATGGCATGTCAACAGGCCAAGC

ATAAAATGCTTTTACCTCTCGATAATAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCCGTGAGCCATTTA

AAAGAAGTTTGTGATCATTTCTTGGGCATGAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA

TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC

TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT

CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGCGCGCC

CCACCATACAGCATCAGCGATTGCACTAGTTGGGGGCGGTTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG

GGGTTTTGTTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA

ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCCTGCCCATG

TGGTTATGCATTTAATCAAGATAGTCGTTGTCAATGTTCACCTGAGAGTATTAAACGTTATCAAAACCGTATATCGGGGC

CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAACGCCTGCTGAA

GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT

TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA

ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA

AGTCCTCATCTTACAGAAGCGCTCTCTTATCGTGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	50.605	100	0.507
comM	Glaesserella parasuis strain SC1401	50.1	100	0.505
comM	Legionella pneumophila str. Paris	49.197	100	0.495
comM	Legionella pneumophila strain ERS1305867	49.197	100	0.495
comM	Haemophilus influenzae Rd KW20	48.697	100	0.491
comM	Vibrio campbellii strain DS40M4	47.677	100	0.477
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.924	100	0.467

Detailed information NTG0865650