Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   WHO38_RS06315 Genome accession   NZ_CP148124
Coordinates   1221263..1222180 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1216263..1227180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS06300 trpS 1216843..1217835 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  WHO38_RS06305 oppA 1218579..1220216 (+) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  WHO38_RS06310 oppB 1220324..1221259 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  WHO38_RS06315 amiD 1221263..1222180 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  WHO38_RS06320 oppD 1222185..1223261 (+) 1077 WP_014906294.1 oligopeptide ABC transporter ATP-binding protein OppD -
  WHO38_RS06325 oppF 1223263..1224180 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  WHO38_RS06330 yjbB 1224287..1225504 (+) 1218 WP_010886478.1 MFS transporter -
  WHO38_RS06335 yjbC 1225668..1226246 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  WHO38_RS06340 spx 1226427..1226822 (+) 396 WP_003245483.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=865545 WHO38_RS06315 WP_003232954.1 1221263..1222180(+) (amiD) [Bacillus subtilis isolate FELIX_MS521]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=865545 WHO38_RS06315 WP_003232954.1 1221263..1222180(+) (amiD) [Bacillus subtilis isolate FELIX_MS521]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364