Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   WDV80_RS01105 Genome accession   NZ_CP147733
Coordinates   236353..237141 (-) Length   262 a.a.
NCBI ID   WP_000090704.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SagR272_TC     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 231353..242141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDV80_RS01065 (WDV80_01065) - 231616..231846 (+) 231 WP_000037098.1 DUF2969 domain-containing protein -
  WDV80_RS01080 (WDV80_01080) rpsA 232190..233392 (+) 1203 WP_112477790.1 30S ribosomal protein S1 -
  WDV80_RS01090 (WDV80_01090) - 233582..234637 (-) 1056 WP_000323185.1 tyrosine-type recombinase/integrase -
  WDV80_RS01095 (WDV80_01095) - 234756..235703 (-) 948 WP_000657652.1 Abi family protein -
  WDV80_RS01100 (WDV80_01100) - 236093..236344 (-) 252 WP_000522436.1 hypothetical protein -
  WDV80_RS01105 (WDV80_01105) irvR 236353..237141 (-) 789 WP_000090704.1 S24 family peptidase Regulator
  WDV80_RS01110 (WDV80_01110) - 237534..237968 (-) 435 WP_000733480.1 hypothetical protein -
  WDV80_RS01115 (WDV80_01115) - 238001..238147 (+) 147 WP_001022154.1 hypothetical protein -
  WDV80_RS01120 (WDV80_01120) - 238265..238657 (-) 393 WP_228380114.1 hypothetical protein -
  WDV80_RS01125 (WDV80_01125) - 238740..238895 (+) 156 WP_000896209.1 hypothetical protein -
  WDV80_RS01130 (WDV80_01130) - 239297..239920 (-) 624 WP_000612517.1 DUF3862 domain-containing protein -
  WDV80_RS01135 (WDV80_01135) - 239989..240684 (-) 696 WP_000224248.1 LrgB family protein -
  WDV80_RS01140 (WDV80_01140) - 240665..241057 (-) 393 WP_000781331.1 CidA/LrgA family protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29787.98 Da        Isoelectric Point: 9.0802

>NTDB_id=862938 WDV80_RS01105 WP_000090704.1 236353..237141(-) (irvR) [Streptococcus agalactiae strain SagR272_TC]
MARGRGKLTPQEIEALRFFSSKLNDLLNETSTKQVELSKATGIPPSTLTGYVKGTSLPIPGNVQKIADYFGLMKSDIDPR
FAPRKKKHELKIPTSPLVNKITKTVVELNVPRKQQVLDYATEQLKEQKNKITSIEETLYEYKVYEKLSAGTGYGYFGDGN
YDTVFYDEQLDYDFASWVFGDSMEPTYLNGEVALIKQTGFDYDGAIYAVEWDGQTYIKKVFREKGGLRLVSLNKKYKDKF
APFSEDPRIIGKVVGNFMPKEY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=862938 WDV80_RS01105 WP_000090704.1 236353..237141(-) (irvR) [Streptococcus agalactiae strain SagR272_TC]
ATGGCAAGAGGAAGAGGTAAATTAACTCCTCAAGAAATAGAGGCATTAAGATTCTTTTCGAGCAAACTAAATGATTTGCT
CAATGAAACAAGTACAAAGCAAGTCGAACTCTCAAAGGCTACAGGAATACCACCAAGCACTCTTACAGGTTATGTTAAAG
GAACATCTTTACCTATTCCAGGTAACGTCCAAAAAATAGCAGATTACTTTGGATTAATGAAGTCTGATATAGACCCAAGA
TTTGCACCTCGTAAGAAAAAACATGAACTCAAAATTCCTACTTCTCCGCTCGTTAACAAAATTACTAAGACGGTTGTTGA
ATTAAATGTTCCACGTAAACAACAAGTACTAGATTATGCTACAGAGCAACTAAAAGAGCAAAAAAATAAAATAACCTCCA
TAGAAGAAACGTTGTACGAATATAAAGTATATGAAAAACTCTCTGCTGGTACAGGGTATGGTTACTTTGGCGACGGAAAT
TACGACACTGTCTTTTATGATGAGCAATTAGACTATGATTTTGCTTCTTGGGTTTTCGGTGATTCAATGGAACCGACTTA
TCTTAATGGCGAAGTCGCACTAATAAAGCAGACAGGCTTTGATTATGATGGAGCTATATATGCTGTCGAATGGGATGGAC
AAACTTATATTAAGAAAGTATTTAGAGAAAAAGGTGGTTTAAGATTAGTTTCTTTAAACAAAAAATACAAAGATAAGTTT
GCACCTTTTAGTGAAGATCCACGTATCATCGGAAAAGTTGTTGGCAATTTTATGCCAAAAGAATATTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(33-71)

Peptidase S24-like (Peptidase_S24)

(165-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

34.539

100

0.401